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Description : (at3g12770 : 611.0) Encodes a pentatricopeptide repeat protein (PPR) protein involved in mitochondrial mRNA editing.; mitochondrial editing factor 22 (MEF22); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G11290.1); Has 43523 Blast hits to 14475 proteins in 290 species: Archae - 0; Bacteria - 15; Metazoa - 148; Fungi - 158; Plants - 42447; Viruses - 0; Other Eukaryotes - 755 (source: NCBI BLink). & (q76c99|rf1_orysa : 117.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1222.0) & (original description: no original description)
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Picea release: MA_14381g0010 | |
| Cluster | HCCA clusters: Cluster_7 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Bradi5g22640 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.02G144100 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Glyma.20G155800 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | Orthogroups_2024-Update | |
| LOC_Os01g72930 | No alias | pentatricopeptide, putative, expressed | 0.02 | Orthogroups_2024-Update | |
| LOC_Os09g24640 | No alias | pentatricopeptide, putative, expressed | 0.02 | Orthogroups_2024-Update | |
| PSME_00001942-RA | No alias | (at3g57430 : 689.0) Encodes a chloroplast RNA editing... | 0.05 | Orthogroups_2024-Update | |
| PSME_00002349-RA | No alias | (at3g12770 : 612.0) Encodes a pentatricopeptide repeat... | 0.05 | Orthogroups_2024-Update | |
| PSME_00005130-RA | No alias | (at4g33990 : 552.0) embryo defective 2758 (EMB2758);... | 0.03 | Orthogroups_2024-Update | |
| PSME_00007759-RA | No alias | (at3g12770 : 656.0) Encodes a pentatricopeptide repeat... | 0.05 | Orthogroups_2024-Update | |
| PSME_00008064-RA | No alias | (at3g49170 : 637.0) embryo defective 2261 (EMB2261);... | 0.04 | Orthogroups_2024-Update | |
| PSME_00008750-RA | No alias | (at1g15510 : 464.0) Encodes a pentatricopeptide repeat... | 0.05 | Orthogroups_2024-Update | |
| PSME_00011508-RA | No alias | (at2g27610 : 744.0) Tetratricopeptide repeat (TPR)-like... | 0.05 | Orthogroups_2024-Update | |
| PSME_00015835-RA | No alias | (at4g01030 : 610.0) pentatricopeptide (PPR)... | 0.04 | Orthogroups_2024-Update | |
| PSME_00016832-RA | No alias | (at4g18750 : 587.0) Encodes a pentatricopeptide (PPR)... | 0.03 | Orthogroups_2024-Update | |
| PSME_00022688-RA | No alias | (at3g46790 : 282.0) Encodes a member of a PCMP (plant... | 0.04 | Orthogroups_2024-Update | |
| PSME_00025196-RA | No alias | (at3g03580 : 681.0) Tetratricopeptide repeat (TPR)-like... | 0.04 | Orthogroups_2024-Update | |
| PSME_00030552-RA | No alias | (at4g18750 : 502.0) Encodes a pentatricopeptide (PPR)... | 0.04 | Orthogroups_2024-Update | |
| PSME_00033965-RA | No alias | (at2g27610 : 573.0) Tetratricopeptide repeat (TPR)-like... | 0.03 | Orthogroups_2024-Update | |
| PSME_00037063-RA | No alias | (at4g18750 : 572.0) Encodes a pentatricopeptide (PPR)... | 0.04 | Orthogroups_2024-Update | |
| PSME_00039409-RA | No alias | (at4g18750 : 537.0) Encodes a pentatricopeptide (PPR)... | 0.04 | Orthogroups_2024-Update | |
| PSME_00039410-RA | No alias | (at2g13600 : 502.0) Pentatricopeptide repeat (PPR)... | 0.04 | Orthogroups_2024-Update | |
| PSME_00041541-RA | No alias | (at3g12770 : 598.0) Encodes a pentatricopeptide repeat... | 0.03 | Orthogroups_2024-Update | |
| PSME_00050145-RA | No alias | (at4g13650 : 719.0) Pentatricopeptide repeat (PPR)... | 0.03 | Orthogroups_2024-Update | |
| PSME_00055621-RA | No alias | (at1g16480 : 701.0) Tetratricopeptide repeat (TPR)-like... | 0.03 | Orthogroups_2024-Update | |
| PSME_00056218-RA | No alias | (at1g11290 : 607.0) Pentatricopeptide Repeat Protein... | 0.03 | Orthogroups_2024-Update | |
| PSME_00056965-RA | No alias | (at4g39530 : 592.0) Tetratricopeptide repeat (TPR)-like... | 0.03 | Orthogroups_2024-Update | |
| PSME_00057114-RA | No alias | (at4g21300 : 528.0) Tetratricopeptide repeat (TPR)-like... | 0.05 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0008270 | zinc ion binding | IEA | InterProScan predictions |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000155 | phosphorelay sensor kinase activity | IEP | Predicted GO |
| MF | GO:0004673 | protein histidine kinase activity | IEP | Predicted GO |
| MF | GO:0016775 | phosphotransferase activity, nitrogenous group as acceptor | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR032867 | DYW_dom | 563 | 686 |
| IPR002885 | Pentatricopeptide_repeat | 464 | 487 |
| IPR002885 | Pentatricopeptide_repeat | 529 | 558 |
| IPR002885 | Pentatricopeptide_repeat | 186 | 234 |
| IPR002885 | Pentatricopeptide_repeat | 288 | 335 |
| IPR002885 | Pentatricopeptide_repeat | 85 | 132 |
| IPR002885 | Pentatricopeptide_repeat | 391 | 436 |
| No external refs found! |