- Home
- Species
- Picea abies
- Sequence
- MA_14707g0010
MA_14707g0010
Description : (at2g30950 : 859.0) Metalloprotease that functions in thylakoid membrane biogenesis. Involved in the repair of PSII following damaged incurred during photoinhibition. Forms a complex with VAR1. Mutants show a variegated phenotype, which decreases during development. Transcript and protein levels increase with light intensity.; VARIEGATED 2 (VAR2); FUNCTIONS IN: metallopeptidase activity, ATP-dependent peptidase activity, ATPase activity, zinc ion binding; INVOLVED IN: photoinhibition, oxygen and reactive oxygen species metabolic process, thylakoid membrane organization, PSII associated light-harvesting complex II catabolic process, protein catabolic process; LOCATED IN: in 6 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M41, FtsH (InterPro:IPR005936), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41 (InterPro:IPR000642), Peptidase M41, FtsH extracellular (InterPro:IPR011546); BEST Arabidopsis thaliana protein match is: FTSH protease 8 (TAIR:AT1G06430.1); Has 42824 Blast hits to 40381 proteins in 3333 species: Archae - 1597; Bacteria - 18199; Metazoa - 4991; Fungi - 3835; Plants - 3350; Viruses - 34; Other Eukaryotes - 10818 (source: NCBI BLink). & (q9bae0|ftsh_medsa : 483.0) Cell division protease ftsH homolog, chloroplast precursor (EC 3.4.24.-) - Medicago sativa (Alfalfa) & (reliability: 1718.0) & (original description: no original description)
Expression Profile
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Co-expression Networks
Type | Description | Actions |
Neighborhood | Picea release: MA_14707g0010 | |
Cluster | HCCA clusters: Cluster_92 | |
Expression Context Conservation (ECC)
Target | Alias | Description | ECC score | Gene Family Method | Actions |
At1g06430 | No alias | ATP-dependent zinc metalloprotease FTSH 8, chloroplastic... | 0.04 | Orthogroups_2024-Update | |
Glyma.04G019100 | No alias | FtsH extracellular protease family | 0.03 | Orthogroups_2024-Update | |
HORVU7Hr1G107740.3 | No alias | EXECUTER-cleavage protease *(FtsH2) & protease... | 0.03 | Orthogroups_2024-Update | |
Seita.4G285900.1 | No alias | protease *(FtsH1/5) & component *(FtsH1/2/5/6/8) of FtsH... | 0.02 | Orthogroups_2024-Update | |
Solyc02g081550 | No alias | LeftsH6FtsH protease | 0.04 | Orthogroups_2024-Update | |
Sopen07g026900 | No alias | Peptidase family M41 | 0.04 | Orthogroups_2024-Update | |
Functional Annotation
Type | GO Term | Name | Evidence | Source |
MF | GO:0000166 | nucleotide binding | None | Extended |
MF | GO:0003674 | molecular_function | None | Extended |
MF | GO:0003824 | catalytic activity | None | Extended |
MF | GO:0004175 | endopeptidase activity | None | Extended |
MF | GO:0004222 | metalloendopeptidase activity | IEA | InterProScan predictions |
MF | GO:0005488 | binding | None | Extended |
MF | GO:0005524 | ATP binding | IEA | InterProScan predictions |
BP | GO:0006508 | proteolysis | IEA | InterProScan predictions |
BP | GO:0006807 | nitrogen compound metabolic process | None | Extended |
MF | GO:0008144 | drug binding | None | Extended |
BP | GO:0008150 | biological_process | None | Extended |
BP | GO:0008152 | metabolic process | None | Extended |
MF | GO:0008233 | peptidase activity | None | Extended |
MF | GO:0008237 | metallopeptidase activity | None | Extended |
MF | GO:0016787 | hydrolase activity | None | Extended |
MF | GO:0017076 | purine nucleotide binding | None | Extended |
BP | GO:0019538 | protein metabolic process | None | Extended |
MF | GO:0030554 | adenyl nucleotide binding | None | Extended |
MF | GO:0032553 | ribonucleotide binding | None | Extended |
MF | GO:0032555 | purine ribonucleotide binding | None | Extended |
MF | GO:0032559 | adenyl ribonucleotide binding | None | Extended |
MF | GO:0035639 | purine ribonucleoside triphosphate binding | None | Extended |
MF | GO:0036094 | small molecule binding | None | Extended |
MF | GO:0043167 | ion binding | None | Extended |
MF | GO:0043168 | anion binding | None | Extended |
BP | GO:0043170 | macromolecule metabolic process | None | Extended |
BP | GO:0044238 | primary metabolic process | None | Extended |
MF | GO:0070011 | peptidase activity, acting on L-amino acid peptides | None | Extended |
BP | GO:0071704 | organic substance metabolic process | None | Extended |
MF | GO:0097159 | organic cyclic compound binding | None | Extended |
MF | GO:0097367 | carbohydrate derivative binding | None | Extended |
MF | GO:0140096 | catalytic activity, acting on a protein | None | Extended |
MF | GO:1901265 | nucleoside phosphate binding | None | Extended |
MF | GO:1901363 | heterocyclic compound binding | None | Extended |
BP | GO:1901564 | organonitrogen compound metabolic process | None | Extended |
Type | GO Term | Name | Evidence | Source |
BP | GO:0000272 | polysaccharide catabolic process | IEP | Predicted GO |
MF | GO:0003924 | GTPase activity | IEP | Predicted GO |
MF | GO:0004089 | carbonate dehydratase activity | IEP | Predicted GO |
MF | GO:0005215 | transporter activity | IEP | Predicted GO |
BP | GO:0006520 | cellular amino acid metabolic process | IEP | Predicted GO |
BP | GO:0006536 | glutamate metabolic process | IEP | Predicted GO |
BP | GO:0006537 | glutamate biosynthetic process | IEP | Predicted GO |
BP | GO:0006814 | sodium ion transport | IEP | Predicted GO |
BP | GO:0007034 | vacuolar transport | IEP | Predicted GO |
BP | GO:0008272 | sulfate transport | IEP | Predicted GO |
BP | GO:0009064 | glutamine family amino acid metabolic process | IEP | Predicted GO |
BP | GO:0009084 | glutamine family amino acid biosynthetic process | IEP | Predicted GO |
BP | GO:0009719 | response to endogenous stimulus | IEP | Predicted GO |
BP | GO:0009725 | response to hormone | IEP | Predicted GO |
BP | GO:0009733 | response to auxin | IEP | Predicted GO |
BP | GO:0010033 | response to organic substance | IEP | Predicted GO |
MF | GO:0015116 | sulfate transmembrane transporter activity | IEP | Predicted GO |
MF | GO:0015930 | glutamate synthase activity | IEP | Predicted GO |
CC | GO:0016020 | membrane | IEP | Predicted GO |
CC | GO:0016021 | integral component of membrane | IEP | Predicted GO |
MF | GO:0016160 | amylase activity | IEP | Predicted GO |
MF | GO:0016161 | beta-amylase activity | IEP | Predicted GO |
BP | GO:0016310 | phosphorylation | IEP | Predicted GO |
MF | GO:0016491 | oxidoreductase activity | IEP | Predicted GO |
MF | GO:0016638 | oxidoreductase activity, acting on the CH-NH2 group of donors | IEP | Predicted GO |
MF | GO:0016836 | hydro-lyase activity | IEP | Predicted GO |
CC | GO:0031224 | intrinsic component of membrane | IEP | Predicted GO |
BP | GO:0043648 | dicarboxylic acid metabolic process | IEP | Predicted GO |
BP | GO:0043650 | dicarboxylic acid biosynthetic process | IEP | Predicted GO |
CC | GO:0044425 | membrane part | IEP | Predicted GO |
MF | GO:0050660 | flavin adenine dinucleotide binding | IEP | Predicted GO |
BP | GO:0072348 | sulfur compound transport | IEP | Predicted GO |
MF | GO:1901682 | sulfur compound transmembrane transporter activity | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
IPR003959 | ATPase_AAA_core | 391 | 522 |
IPR000642 | Peptidase_M41 | 605 | 793 |