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  5. Solyc10g047790

Solyc10g047790


No description available


Gene families : OG_42_0000004 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc10g047790
Cluster HCCA clusters: Cluster_270

Target Alias Description ECC score Gene Family Method Actions
Cre08.g380151 No alias methyl-CPG-binding domain 9 0.02 Orthogroups_2024-Update
Glyma.14G183700 No alias Function unknown 0.03 Orthogroups_2024-Update
HORVU4Hr1G045770.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU6Hr1G052870.1 No alias Unknown function 0.02 Orthogroups_2024-Update
LOC_Os05g29700 No alias retrotransposon, putative, centromere-specific, expressed 0.02 Orthogroups_2024-Update
LOC_Os08g35020 No alias retrotransposon protein, putative, unclassified, expressed 0.05 Orthogroups_2024-Update
PSME_00024374-RA No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
Sopen02g012390 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen04g017770 No alias Integrase core domain 0.03 Orthogroups_2024-Update
Sopen04g035310 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen09g009210 No alias Retrotransposon gag protein 0.04 Orthogroups_2024-Update
Sopen09g030490 No alias Retroviral aspartyl protease 0.05 Orthogroups_2024-Update
Sopen10g020660 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen12g019980 No alias Integrase core domain 0.02 Orthogroups_2024-Update
Sopen12g025510 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP Predicted GO
BP GO:0006812 cation transport IEP Predicted GO
MF GO:0008131 primary amine oxidase activity IEP Predicted GO
BP GO:0009308 amine metabolic process IEP Predicted GO
MF GO:0010333 terpene synthase activity IEP Predicted GO
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP Predicted GO
MF GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor IEP Predicted GO
MF GO:0016829 lyase activity IEP Predicted GO
MF GO:0016835 carbon-oxygen lyase activity IEP Predicted GO
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP Predicted GO
BP GO:0030001 metal ion transport IEP Predicted GO
MF GO:0048038 quinone binding IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!