MA_153387g0010

Description : (at5g65360 : 137.0) Histone superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: chloroplast, nucleosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Histone H3 (InterPro:IPR000164), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT5G10400.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p69248|h32_petcr : 137.0) Histone H3.2 - Petroselinum crispum (Parsley) (Petroselinum hortense) & (reliability: 274.0) & (original description: no original description)

Gene families : OG_42_0000090 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000090_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Picea release: MA_153387g0010
Cluster	HCCA clusters: Cluster_225

Target	Alias	Description	ECC score	Gene Family Method
At1g09200	No alias	Histone H3 [Source:UniProtKB/TrEMBL;Acc:A0A178WG20]	0.03	Orthogroups_2024-Update
At1g19890	No alias	MGH3 [Source:UniProtKB/TrEMBL;Acc:A0A178WKL2]	0.04	Orthogroups_2024-Update
At3g27360	No alias	Histone H3 [Source:UniProtKB/TrEMBL;Acc:A0A178WG20]	0.02	Orthogroups_2024-Update
At5g10390	No alias	Histone H3 [Source:UniProtKB/TrEMBL;Acc:A0A178WG20]	0.02	Orthogroups_2024-Update
At5g10400	No alias	Histone H3 [Source:UniProtKB/TrEMBL;Acc:A0A178WG20]	0.03	Orthogroups_2024-Update
Bradi3g45500	No alias	Histone superfamily protein	0.02	Orthogroups_2024-Update
Brara.D00649.1	No alias	histone *(H3)	0.02	Orthogroups_2024-Update
Brara.I00815.1	No alias	histone *(H3)	0.02	Orthogroups_2024-Update
GRMZM2G078314	No alias	Histone superfamily protein	0.02	Orthogroups_2024-Update
GRMZM2G355773	No alias	Histone superfamily protein	0.02	Orthogroups_2024-Update
Glyma.05G188600	No alias	Histone superfamily protein	0.03	Orthogroups_2024-Update
Glyma.07G202500	No alias	Histone superfamily protein	0.03	Orthogroups_2024-Update
Glyma.12G055200	No alias	Histone superfamily protein	0.05	Orthogroups_2024-Update
Glyma.15G222200	No alias	Histone superfamily protein	0.04	Orthogroups_2024-Update
Glyma.17G255602	No alias	Histone superfamily protein	0.03	Orthogroups_2024-Update
Glyma.18G266200	No alias	Histone superfamily protein	0.03	Orthogroups_2024-Update
LOC_Os05g41080	No alias	histone H3, putative, expressed	0.02	Orthogroups_2024-Update
Sobic.009G178900.1	No alias	Unknown function	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEA	InterProScan predictions
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0032993	protein-DNA complex	None	Extended
CC	GO:0044422	organelle part	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044427	chromosomal part	None	Extended
CC	GO:0044446	intracellular organelle part	None	Extended
CC	GO:0044464	cell part	None	Extended
CC	GO:0044815	DNA packaging complex	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000145	exocyst	IEP	Predicted GO
MF	GO:0003735	structural constituent of ribosome	IEP	Predicted GO
MF	GO:0005198	structural molecule activity	IEP	Predicted GO
CC	GO:0005840	ribosome	IEP	Predicted GO
BP	GO:0006412	translation	IEP	Predicted GO
BP	GO:0006518	peptide metabolic process	IEP	Predicted GO
BP	GO:0006887	exocytosis	IEP	Predicted GO
MF	GO:0008173	RNA methyltransferase activity	IEP	Predicted GO
BP	GO:0032940	secretion by cell	IEP	Predicted GO
BP	GO:0043043	peptide biosynthetic process	IEP	Predicted GO
CC	GO:0043228	non-membrane-bounded organelle	IEP	Predicted GO
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	Predicted GO
BP	GO:0043603	cellular amide metabolic process	IEP	Predicted GO
BP	GO:0043604	amide biosynthetic process	IEP	Predicted GO
CC	GO:0044444	cytoplasmic part	IEP	Predicted GO
CC	GO:0044448	cell cortex part	IEP	Predicted GO
BP	GO:0046903	secretion	IEP	Predicted GO
CC	GO:0099023	tethering complex	IEP	Predicted GO
CC	GO:1990904	ribonucleoprotein complex	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR007125	Histone_H2A/H2B/H3	2	77

External Links

No external refs found!

MA_153387g0010

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation