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Description : (p25872|pal1_tobac : 829.0) Phenylalanine ammonia-lyase (EC 4.3.1.5) - Nicotiana tabacum (Common tobacco) & (at3g53260 : 823.0) Encodes phenylalanine lyase. Arabidopsis has four PALs: AT2G37040 (PAL1), AT3G53260 (PAL2), AT5G04230 (PAL3) and AT3G10340 (PAL4).; phenylalanine ammonia-lyase 2 (PAL2); FUNCTIONS IN: phenylalanine ammonia-lyase activity; INVOLVED IN: response to oxidative stress, response to karrikin, phenylpropanoid biosynthetic process, response to wounding, defense response; LOCATED IN: cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Phenylalanine/histidine ammonia-lyase (InterPro:IPR001106), Phenylalanine/histidine ammonia-lyases, active site (InterPro:IPR022313), L-Aspartase-like (InterPro:IPR008948), Phenylalanine ammonia-lyase (InterPro:IPR005922); BEST Arabidopsis thaliana protein match is: PHE ammonia lyase 1 (TAIR:AT2G37040.1); Has 4835 Blast hits to 4816 proteins in 1397 species: Archae - 40; Bacteria - 2928; Metazoa - 79; Fungi - 127; Plants - 1172; Viruses - 0; Other Eukaryotes - 489 (source: NCBI BLink). & (reliability: 1646.0) & (original description: no original description)
Gene families : OG_42_0000392 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000392_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Picea release: MA_15852g0010 | |
| Cluster | HCCA clusters: Cluster_76 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Bradi3g49280 | No alias | PHE ammonia lyase 1 | 0.04 | Orthogroups_2024-Update | |
| Brara.D01245.1 | No alias | phenylalanine ammonia lyase *(PAL) & EC_4.3 carbon-nitrogen lyase | 0.03 | Orthogroups_2024-Update | |
| HORVU1Hr1G022060.1 | No alias | phenylalanine ammonia lyase *(PAL) & EC_4.3 carbon-nitrogen lyase | 0.02 | Orthogroups_2024-Update | |
| HORVU2Hr1G089440.4 | No alias | phenylalanine ammonia lyase *(PAL) & EC_4.3 carbon-nitrogen lyase | 0.03 | Orthogroups_2024-Update | |
| HORVU6Hr1G058840.1 | No alias | phenylalanine ammonia lyase *(PAL) & EC_4.3 carbon-nitrogen lyase | 0.03 | Orthogroups_2024-Update | |
| LOC_Os12g33610 | No alias | phenylalanine ammonia-lyase, putative, expressed | 0.03 | Orthogroups_2024-Update | |
| Mp1g05220.1 | No alias | phenylalanine ammonia lyase (PAL) | 0.02 | Orthogroups_2024-Update | |
| Mp4g14170.1 | No alias | phenylalanine ammonia lyase (PAL) | 0.02 | Orthogroups_2024-Update | |
| PSME_00011716-RA | No alias | (at3g10340 : 932.0) Encodes PAL4, a putative a... | 0.03 | Orthogroups_2024-Update | |
| PSME_00022739-RA | No alias | (at3g10340 : 547.0) Encodes PAL4, a putative a... | 0.04 | Orthogroups_2024-Update | |
| Pp1s22_3V6 | No alias | phenylalanine ammonia-lyase | 0.03 | Orthogroups_2024-Update | |
| Seita.6G181000.1 | No alias | phenylalanine ammonia lyase *(PAL) & EC_4.3 carbon-nitrogen lyase | 0.05 | Orthogroups_2024-Update | |
| Seita.7G168800.1 | No alias | phenylalanine ammonia lyase *(PAL) & EC_4.3 carbon-nitrogen lyase | 0.04 | Orthogroups_2024-Update | |
| Sobic.004G220600.2 | No alias | phenylalanine ammonia lyase *(PAL) & EC_4.3 carbon-nitrogen lyase | 0.03 | Orthogroups_2024-Update | |
| Solyc10g011920 | No alias | Phenylalanine ammonia-lyase (AHRD V3.3 *** A0A124SBF6_CYNCS) | 0.02 | Orthogroups_2024-Update | |
| Solyc10g086180 | No alias | Phenylalanine ammonia-lyase (AHRD V3.3 *** PAL2_TOBAC) | 0.02 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003674 | molecular_function | IEP | Predicted GO |
| MF | GO:0003824 | catalytic activity | IEP | Predicted GO |
| MF | GO:0004664 | prephenate dehydratase activity | IEP | Predicted GO |
| BP | GO:0006558 | L-phenylalanine metabolic process | IEP | Predicted GO |
| BP | GO:0008037 | cell recognition | IEP | Predicted GO |
| BP | GO:0008152 | metabolic process | IEP | Predicted GO |
| BP | GO:0009072 | aromatic amino acid family metabolic process | IEP | Predicted GO |
| BP | GO:0009073 | aromatic amino acid family biosynthetic process | IEP | Predicted GO |
| BP | GO:0009094 | L-phenylalanine biosynthetic process | IEP | Predicted GO |
| BP | GO:0009095 | aromatic amino acid family biosynthetic process, prephenate pathway | IEP | Predicted GO |
| BP | GO:0009116 | nucleoside metabolic process | IEP | Predicted GO |
| MF | GO:0016491 | oxidoreductase activity | IEP | Predicted GO |
| MF | GO:0016740 | transferase activity | IEP | Predicted GO |
| MF | GO:0016829 | lyase activity | IEP | Predicted GO |
| MF | GO:0016835 | carbon-oxygen lyase activity | IEP | Predicted GO |
| MF | GO:0016836 | hydro-lyase activity | IEP | Predicted GO |
| BP | GO:0022414 | reproductive process | IEP | Predicted GO |
| MF | GO:0048037 | cofactor binding | IEP | Predicted GO |
| BP | GO:0048544 | recognition of pollen | IEP | Predicted GO |
| MF | GO:0050660 | flavin adenine dinucleotide binding | IEP | Predicted GO |
| BP | GO:0055114 | oxidation-reduction process | IEP | Predicted GO |
| BP | GO:1901657 | glycosyl compound metabolic process | IEP | Predicted GO |
| BP | GO:1902221 | erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process | IEP | Predicted GO |
| BP | GO:1902223 | erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR001106 | Aromatic_Lyase | 84 | 552 |
| No external refs found! |