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Description : (at4g13650 : 505.0) Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G16480.1); Has 61118 Blast hits to 14026 proteins in 284 species: Archae - 2; Bacteria - 18; Metazoa - 154; Fungi - 167; Plants - 59907; Viruses - 0; Other Eukaryotes - 870 (source: NCBI BLink). & (q76c99|rf1_orysa : 177.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1010.0) & (original description: no original description)
Gene families : OG_42_0012092 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0012092_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Picea release: MA_15913g0010 | |
| Cluster | HCCA clusters: Cluster_7 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| PSME_00023277-RA | No alias | (at5g16860 : 510.0) Tetratricopeptide repeat (TPR)-like... | 0.03 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003674 | molecular_function | IEP | Predicted GO |
| MF | GO:0005488 | binding | IEP | Predicted GO |
| MF | GO:0008270 | zinc ion binding | IEP | Predicted GO |
| MF | GO:0043167 | ion binding | IEP | Predicted GO |
| MF | GO:0043169 | cation binding | IEP | Predicted GO |
| MF | GO:0046872 | metal ion binding | IEP | Predicted GO |
| MF | GO:0046914 | transition metal ion binding | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 287 | 311 |
| IPR002885 | Pentatricopeptide_repeat | 416 | 446 |
| IPR002885 | Pentatricopeptide_repeat | 761 | 785 |
| IPR002885 | Pentatricopeptide_repeat | 553 | 582 |
| IPR002885 | Pentatricopeptide_repeat | 660 | 685 |
| IPR002885 | Pentatricopeptide_repeat | 387 | 412 |
| IPR002885 | Pentatricopeptide_repeat | 523 | 547 |
| IPR002885 | Pentatricopeptide_repeat | 585 | 631 |
| IPR002885 | Pentatricopeptide_repeat | 313 | 355 |
| IPR002885 | Pentatricopeptide_repeat | 448 | 496 |
| IPR002885 | Pentatricopeptide_repeat | 214 | 251 |
| IPR002885 | Pentatricopeptide_repeat | 113 | 160 |
| IPR002885 | Pentatricopeptide_repeat | 686 | 733 |
| No external refs found! |