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  5. MA_16226g0010

MA_16226g0010


Description : (at3g03580 : 604.0) Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G18750.1); Has 54534 Blast hits to 14239 proteins in 270 species: Archae - 2; Bacteria - 13; Metazoa - 57; Fungi - 143; Plants - 53473; Viruses - 0; Other Eukaryotes - 846 (source: NCBI BLink). & (q76c99|rf1_orysa : 137.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1208.0) & (original description: no original description)


Gene families : OG_42_0022238 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_16226g0010
Cluster HCCA clusters: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
PSME_00022458-RA No alias (at3g63370 : 582.0) Encodes a chloroplast RNA editing... 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 747 770
IPR002885 Pentatricopeptide_repeat 131 154
IPR002885 Pentatricopeptide_repeat 242 266
IPR002885 Pentatricopeptide_repeat 63 86
IPR032867 DYW_dom 845 916
IPR002885 Pentatricopeptide_repeat 369 416
IPR002885 Pentatricopeptide_repeat 672 719
IPR002885 Pentatricopeptide_repeat 571 617
IPR002885 Pentatricopeptide_repeat 155 200
IPR002885 Pentatricopeptide_repeat 469 518
IPR002885 Pentatricopeptide_repeat 268 314
No external refs found!