Description : (at2g22070 : 558.0) pentatricopeptide (PPR) repeat-containing protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G25360.1); Has 47939 Blast hits to 14346 proteins in 287 species: Archae - 0; Bacteria - 20; Metazoa - 98; Fungi - 122; Plants - 46979; Viruses - 0; Other Eukaryotes - 720 (source: NCBI BLink). & (q76c99|rf1_orysa : 138.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1028.0) & (original description: no original description)
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Picea release: MA_16457g0010 | |
Cluster | HCCA clusters: Cluster_149 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
136134 | No alias | mitochondrial editing factor 22 | 0.03 | Orthogroups_2024-Update | |
30579 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | Orthogroups_2024-Update | |
At4g39530 | No alias | Pentatricopeptide repeat-containing protein At4g39530... | 0.03 | Orthogroups_2024-Update | |
Bradi4g19150 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Bradi4g22520 | No alias | mitochondrial editing factor 22 | 0.03 | Orthogroups_2024-Update | |
HORVU2Hr1G084530.3 | No alias | RNA editing factor *(SLO4) | 0.03 | Orthogroups_2024-Update | |
LOC_Os05g36350 | No alias | pentatricopeptide, putative, expressed | 0.02 | Orthogroups_2024-Update | |
MA_127785g0010 | No alias | (at2g03880 : 512.0) Pentatricopeptide repeat (PPR)... | 0.04 | Orthogroups_2024-Update | |
PSME_00004828-RA | No alias | (at4g13650 : 573.0) Pentatricopeptide repeat (PPR)... | 0.03 | Orthogroups_2024-Update | |
Seita.2G068700.1 | No alias | RNA editing factor *(CRR28) | 0.02 | Orthogroups_2024-Update | |
Sobic.001G444200.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Sobic.006G153300.2 | No alias | RNA editing factor *(MEF21) | 0.05 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0008270 | zinc ion binding | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0004640 | phosphoribosylanthranilate isomerase activity | IEP | Predicted GO |
CC | GO:0005643 | nuclear pore | IEP | Predicted GO |
BP | GO:0006405 | RNA export from nucleus | IEP | Predicted GO |
BP | GO:0006406 | mRNA export from nucleus | IEP | Predicted GO |
BP | GO:0006568 | tryptophan metabolic process | IEP | Predicted GO |
BP | GO:0006576 | cellular biogenic amine metabolic process | IEP | Predicted GO |
BP | GO:0006586 | indolalkylamine metabolic process | IEP | Predicted GO |
BP | GO:0006913 | nucleocytoplasmic transport | IEP | Predicted GO |
MF | GO:0008641 | ubiquitin-like modifier activating enzyme activity | IEP | Predicted GO |
BP | GO:0009072 | aromatic amino acid family metabolic process | IEP | Predicted GO |
BP | GO:0009308 | amine metabolic process | IEP | Predicted GO |
BP | GO:0010207 | photosystem II assembly | IEP | Predicted GO |
BP | GO:0015931 | nucleobase-containing compound transport | IEP | Predicted GO |
MF | GO:0016860 | intramolecular oxidoreductase activity | IEP | Predicted GO |
MF | GO:0016861 | intramolecular oxidoreductase activity, interconverting aldoses and ketoses | IEP | Predicted GO |
MF | GO:0016877 | ligase activity, forming carbon-sulfur bonds | IEP | Predicted GO |
BP | GO:0016973 | poly(A)+ mRNA export from nucleus | IEP | Predicted GO |
BP | GO:0022607 | cellular component assembly | IEP | Predicted GO |
BP | GO:0034622 | cellular protein-containing complex assembly | IEP | Predicted GO |
BP | GO:0042430 | indole-containing compound metabolic process | IEP | Predicted GO |
BP | GO:0043933 | protein-containing complex subunit organization | IEP | Predicted GO |
BP | GO:0044106 | cellular amine metabolic process | IEP | Predicted GO |
CC | GO:0044428 | nuclear part | IEP | Predicted GO |
BP | GO:0050657 | nucleic acid transport | IEP | Predicted GO |
BP | GO:0050658 | RNA transport | IEP | Predicted GO |
BP | GO:0051028 | mRNA transport | IEP | Predicted GO |
BP | GO:0051168 | nuclear export | IEP | Predicted GO |
BP | GO:0051169 | nuclear transport | IEP | Predicted GO |
BP | GO:0051236 | establishment of RNA localization | IEP | Predicted GO |
BP | GO:0065003 | protein-containing complex assembly | IEP | Predicted GO |
BP | GO:1901605 | alpha-amino acid metabolic process | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002885 | Pentatricopeptide_repeat | 262 | 309 |
IPR002885 | Pentatricopeptide_repeat | 129 | 177 |
IPR002885 | Pentatricopeptide_repeat | 363 | 411 |
IPR002885 | Pentatricopeptide_repeat | 437 | 461 |
IPR002885 | Pentatricopeptide_repeat | 337 | 362 |
IPR002885 | Pentatricopeptide_repeat | 205 | 232 |
IPR002885 | Pentatricopeptide_repeat | 67 | 111 |
IPR032867 | DYW_dom | 536 | 659 |
No external refs found! |