Description : (at2g22070 : 486.0) pentatricopeptide (PPR) repeat-containing protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G25360.1); Has 47939 Blast hits to 14346 proteins in 287 species: Archae - 0; Bacteria - 20; Metazoa - 98; Fungi - 122; Plants - 46979; Viruses - 0; Other Eukaryotes - 720 (source: NCBI BLink). & (q76c99|rf1_orysa : 185.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 972.0) & (original description: no original description)
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Picea release: MA_1673g0010 | |
Cluster | HCCA clusters: Cluster_83 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
34426 | No alias | pentatricopeptide (PPR) repeat-containing protein | 0.04 | Orthogroups_2024-Update | |
85926 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
HORVU2Hr1G035330.2 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
PSME_00002641-RA | No alias | (at1g11290 : 548.0) Pentatricopeptide Repeat Protein... | 0.03 | Orthogroups_2024-Update | |
PSME_00008064-RA | No alias | (at3g49170 : 637.0) embryo defective 2261 (EMB2261);... | 0.04 | Orthogroups_2024-Update | |
PSME_00011207-RA | No alias | (at3g63370 : 641.0) Encodes a chloroplast RNA editing... | 0.03 | Orthogroups_2024-Update | |
PSME_00017819-RA | No alias | (at3g03580 : 689.0) Tetratricopeptide repeat (TPR)-like... | 0.03 | Orthogroups_2024-Update | |
PSME_00021863-RA | No alias | (at2g22070 : 612.0) pentatricopeptide (PPR)... | 0.03 | Orthogroups_2024-Update | |
PSME_00031833-RA | No alias | (at3g13770 : 501.0) Pentatricopeptide repeat (PPR)... | 0.06 | Orthogroups_2024-Update | |
PSME_00031955-RA | No alias | (at1g11290 : 710.0) Pentatricopeptide Repeat Protein... | 0.03 | Orthogroups_2024-Update | |
PSME_00033049-RA | No alias | (at1g11290 : 583.0) Pentatricopeptide Repeat Protein... | 0.05 | Orthogroups_2024-Update | |
PSME_00041541-RA | No alias | (at3g12770 : 598.0) Encodes a pentatricopeptide repeat... | 0.05 | Orthogroups_2024-Update | |
PSME_00042924-RA | No alias | (at3g57430 : 662.0) Encodes a chloroplast RNA editing... | 0.04 | Orthogroups_2024-Update | |
PSME_00048055-RA | No alias | (at4g13650 : 598.0) Pentatricopeptide repeat (PPR)... | 0.04 | Orthogroups_2024-Update | |
PSME_00051353-RA | No alias | (at4g13650 : 695.0) Pentatricopeptide repeat (PPR)... | 0.04 | Orthogroups_2024-Update | |
PSME_00052953-RA | No alias | (at4g13650 : 635.0) Pentatricopeptide repeat (PPR)... | 0.04 | Orthogroups_2024-Update | |
PSME_00056168-RA | No alias | (at3g61170 : 686.0) Tetratricopeptide repeat (TPR)-like... | 0.03 | Orthogroups_2024-Update | |
PSME_00056424-RA | No alias | (at2g22070 : 461.0) pentatricopeptide (PPR)... | 0.05 | Orthogroups_2024-Update | |
PSME_00056507-RA | No alias | (at1g16480 : 719.0) Tetratricopeptide repeat (TPR)-like... | 0.04 | Orthogroups_2024-Update | |
PSME_00056594-RA | No alias | (at3g53360 : 383.0) Tetratricopeptide repeat (TPR)-like... | 0.03 | Orthogroups_2024-Update | |
PSME_00056623-RA | No alias | (at2g03880 : 555.0) Pentatricopeptide repeat (PPR)... | 0.03 | Orthogroups_2024-Update | |
PSME_00056663-RA | No alias | (at3g13770 : 545.0) Pentatricopeptide repeat (PPR)... | 0.03 | Orthogroups_2024-Update | |
PSME_00056779-RA | No alias | (at4g13650 : 709.0) Pentatricopeptide repeat (PPR)... | 0.05 | Orthogroups_2024-Update | |
PSME_00056965-RA | No alias | (at4g39530 : 592.0) Tetratricopeptide repeat (TPR)-like... | 0.04 | Orthogroups_2024-Update | |
PSME_00057046-RA | No alias | (at4g18750 : 592.0) Encodes a pentatricopeptide (PPR)... | 0.05 | Orthogroups_2024-Update | |
PSME_00057114-RA | No alias | (at4g21300 : 528.0) Tetratricopeptide repeat (TPR)-like... | 0.04 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0004721 | phosphoprotein phosphatase activity | IEP | Predicted GO |
CC | GO:0005875 | microtubule associated complex | IEP | Predicted GO |
BP | GO:0007017 | microtubule-based process | IEP | Predicted GO |
MF | GO:0008138 | protein tyrosine/serine/threonine phosphatase activity | IEP | Predicted GO |
MF | GO:0008270 | zinc ion binding | IEP | Predicted GO |
BP | GO:0016311 | dephosphorylation | IEP | Predicted GO |
MF | GO:0016791 | phosphatase activity | IEP | Predicted GO |
CC | GO:0030286 | dynein complex | IEP | Predicted GO |
MF | GO:0043167 | ion binding | IEP | Predicted GO |
MF | GO:0043169 | cation binding | IEP | Predicted GO |
CC | GO:0044430 | cytoskeletal part | IEP | Predicted GO |
MF | GO:0046872 | metal ion binding | IEP | Predicted GO |
MF | GO:0046914 | transition metal ion binding | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002885 | Pentatricopeptide_repeat | 231 | 258 |
IPR002885 | Pentatricopeptide_repeat | 260 | 290 |
IPR002885 | Pentatricopeptide_repeat | 616 | 640 |
IPR002885 | Pentatricopeptide_repeat | 390 | 408 |
IPR002885 | Pentatricopeptide_repeat | 412 | 440 |
IPR002885 | Pentatricopeptide_repeat | 368 | 386 |
IPR002885 | Pentatricopeptide_repeat | 441 | 488 |
IPR002885 | Pentatricopeptide_repeat | 292 | 340 |
IPR002885 | Pentatricopeptide_repeat | 541 | 590 |
IPR002885 | Pentatricopeptide_repeat | 130 | 177 |
No external refs found! |