1. Home
  2. Species
  3. Picea abies
  4. Sequence
  5. MA_168323g0010

MA_168323g0010


Description : (at1g60650 : 142.0) RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain; FUNCTIONS IN: RNA binding, nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (TAIR:AT5G04280.1); Has 996832 Blast hits to 989721 proteins in 35749 species: Archae - 21265; Bacteria - 589617; Metazoa - 208621; Fungi - 26263; Plants - 58603; Viruses - 68007; Other Eukaryotes - 24456 (source: NCBI BLink). & (q05966|grp10_brana : 111.0) Glycine-rich RNA-binding protein 10 - Brassica napus (Rape) & (reliability: 284.0) & (original description: no original description)


Gene families : OG_42_0000107 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000107_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_168323g0010
Cluster HCCA clusters: Cluster_128

Target Alias Description ECC score Gene Family Method Actions
Brara.G03194.1 No alias RNA editing factor *(ORRM3) 0.03 Orthogroups_2024-Update
LOC_Os10g17454 No alias RNA recognition motif containing protein, expressed 0.03 Orthogroups_2024-Update
LOC_Os12g43600 No alias RNA recognition motif containing protein, expressed 0.03 Orthogroups_2024-Update
PSME_00047208-RA No alias (at5g61030 : 152.0) encodes a glycine-rich RNA binding... 0.03 Orthogroups_2024-Update
PSME_00055366-RA No alias (at1g60650 : 144.0) RNA-binding (RRM/RBD/RNP motifs)... 0.03 Orthogroups_2024-Update
Potri.008G033000 No alias RNA-binding (RRM/RBD/RNP motifs) family protein with... 0.03 Orthogroups_2024-Update
Pp1s45_280V6 No alias glycine-rich rna-binding 0.02 Orthogroups_2024-Update
Seita.6G068900.1 No alias RNA editing factor *(ORRM2) 0.02 Orthogroups_2024-Update
Seita.9G061400.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.008G185900.1 No alias Unknown function 0.02 Orthogroups_2024-Update
evm.model.tig00000826.12 No alias (at3g23830 : 98.2) encodes a glycine-rich RNA binding... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0008270 zinc ion binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003993 acid phosphatase activity IEP Predicted GO
MF GO:0016791 phosphatase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 188 202
IPR000504 RRM_dom 81 150
No external refs found!