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  5. MA_16962g0010

MA_16962g0010


Description : (at4g18750 : 622.0) Encodes a pentatricopeptide (PPR) protein involved in leaf and root development. dot4 mutants have an aberrant midgap venation pattern in juvenile leaves and cotyledons.; DEFECTIVELY ORGANIZED TRIBUTARIES 4 (DOT4); INVOLVED IN: cotyledon vascular tissue pattern formation, phloem or xylem histogenesis, leaf vascular tissue pattern formation, leaf development; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G16860.1); Has 49728 Blast hits to 14531 proteins in 279 species: Archae - 0; Bacteria - 13; Metazoa - 210; Fungi - 140; Plants - 48642; Viruses - 0; Other Eukaryotes - 723 (source: NCBI BLink). & (q76c99|rf1_orysa : 121.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1244.0) & (original description: no original description)


Gene families : OG_42_0022243 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Type Description Actions
Neighborhood Picea release: MA_16962g0010
Cluster HCCA clusters: Cluster_158

Target Alias Description ECC score Gene Family Method Actions
PSME_00000071-RA No alias (at4g18750 : 650.0) Encodes a pentatricopeptide (PPR)... 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 964 980
IPR002885 Pentatricopeptide_repeat 482 507
IPR002885 Pentatricopeptide_repeat 288 312
IPR002885 Pentatricopeptide_repeat 583 606
IPR002885 Pentatricopeptide_repeat 187 211
IPR002885 Pentatricopeptide_repeat 28 45
IPR002885 Pentatricopeptide_repeat 389 415
IPR002885 Pentatricopeptide_repeat 215 260
IPR002885 Pentatricopeptide_repeat 508 555
IPR002885 Pentatricopeptide_repeat 314 361
IPR002885 Pentatricopeptide_repeat 112 159
IPR032867 DYW_dom 681 805
No external refs found!