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Description : (at2g40610 : 331.0) member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.; expansin A8 (EXPA8); INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth, syncytium formation, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Pollen allergen/expansin, C-terminal (InterPro:IPR007117), Barwin-related endoglucanase (InterPro:IPR009009), Expansin (InterPro:IPR002963), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112); BEST Arabidopsis thaliana protein match is: expansin A2 (TAIR:AT5G05290.1); Has 2297 Blast hits to 2294 proteins in 186 species: Archae - 0; Bacteria - 19; Metazoa - 0; Fungi - 45; Plants - 2187; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink). & (p93442|expa4_orysa : 317.0) Expansin-A4 precursor (OsEXPA4) (Alpha-expansin-4) (OsEXP4) (OsaEXPa1.22) - Oryza sativa (Rice) & (reliability: 662.0) & (original description: no original description)
Gene families : OG_42_0000014 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000014_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Picea release: MA_172610g0010 | |
| Cluster | HCCA clusters: Cluster_173 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| A4A49_04302 | No alias | expansin-a10 | 0.03 | Orthogroups_2024-Update | |
| A4A49_61517 | No alias | expansin-a23 | 0.03 | Orthogroups_2024-Update | |
| Bradi5g04120 | No alias | expansin 11 | 0.02 | Orthogroups_2024-Update | |
| Brara.B01861.1 | No alias | alpha-class expansin | 0.02 | Orthogroups_2024-Update | |
| Brara.C00061.1 | No alias | alpha-class expansin | 0.03 | Orthogroups_2024-Update | |
| Brara.E00178.1 | No alias | alpha-class expansin | 0.02 | Orthogroups_2024-Update | |
| Brara.F03107.1 | No alias | alpha-class expansin | 0.04 | Orthogroups_2024-Update | |
| Glyma.07G229000 | No alias | expansin A15 | 0.02 | Orthogroups_2024-Update | |
| Glyma.17G101400 | No alias | expansin A15 | 0.02 | Orthogroups_2024-Update | |
| Glyma.18G265400 | No alias | expansin A23 | 0.02 | Orthogroups_2024-Update | |
| MA_100868g0010 | No alias | (at2g40610 : 292.0) member of Alpha-Expansin Gene... | 0.04 | Orthogroups_2024-Update | |
| MA_10377235g0010 | No alias | (at2g40610 : 412.0) member of Alpha-Expansin Gene... | 0.04 | Orthogroups_2024-Update | |
| MA_114349g0010 | No alias | (at1g26770 : 288.0) Encodes an expansin. Naming... | 0.04 | Orthogroups_2024-Update | |
| MA_30127g0010 | No alias | (at2g40610 : 411.0) member of Alpha-Expansin Gene... | 0.04 | Orthogroups_2024-Update | |
| MA_316222g0010 | No alias | (at2g40610 : 383.0) member of Alpha-Expansin Gene... | 0.04 | Orthogroups_2024-Update | |
| MA_61945g0010 | No alias | (q40636|expa2_orysa : 398.0) Expansin-A2 precursor... | 0.06 | Orthogroups_2024-Update | |
| MA_86877g0010 | No alias | (at1g69530 : 387.0) Member of Alpha-Expansin Gene... | 0.03 | Orthogroups_2024-Update | |
| Mp1g22730.1 | No alias | alpha-class expansin | 0.02 | Orthogroups_2024-Update | |
| Mp5g01930.1 | No alias | alpha-class expansin | 0.01 | Orthogroups_2024-Update | |
| PSME_00018430-RA | No alias | (at2g40610 : 404.0) member of Alpha-Expansin Gene... | 0.02 | Orthogroups_2024-Update | |
| Potri.002G184700 | No alias | expansin A17 | 0.03 | Orthogroups_2024-Update | |
| Seita.9G342900.1 | No alias | alpha-class expansin | 0.03 | Orthogroups_2024-Update | |
| Sobic.003G444400.1 | No alias | alpha-class expansin | 0.03 | Orthogroups_2024-Update | |
| Sobic.009G173700.1 | No alias | alpha-class expansin | 0.02 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000105 | histidine biosynthetic process | IEP | Predicted GO |
| CC | GO:0000786 | nucleosome | IEP | Predicted GO |
| MF | GO:0003879 | ATP phosphoribosyltransferase activity | IEP | Predicted GO |
| BP | GO:0006520 | cellular amino acid metabolic process | IEP | Predicted GO |
| BP | GO:0006547 | histidine metabolic process | IEP | Predicted GO |
| MF | GO:0016597 | amino acid binding | IEP | Predicted GO |
| MF | GO:0016743 | carboxyl- or carbamoyltransferase activity | IEP | Predicted GO |
| MF | GO:0016763 | transferase activity, transferring pentosyl groups | IEP | Predicted GO |
| BP | GO:0030258 | lipid modification | IEP | Predicted GO |
| MF | GO:0031406 | carboxylic acid binding | IEP | Predicted GO |
| CC | GO:0032993 | protein-DNA complex | IEP | Predicted GO |
| MF | GO:0043177 | organic acid binding | IEP | Predicted GO |
| CC | GO:0044815 | DNA packaging complex | IEP | Predicted GO |
| BP | GO:0046834 | lipid phosphorylation | IEP | Predicted GO |
| BP | GO:0046854 | phosphatidylinositol phosphorylation | IEP | Predicted GO |
| BP | GO:0052803 | imidazole-containing compound metabolic process | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR007117 | Expansin_CBD | 147 | 224 |
| No external refs found! |