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  5. MA_17390g0010

MA_17390g0010


Description : (at3g61550 : 149.0) RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G46160.1); Has 8101 Blast hits to 8077 proteins in 273 species: Archae - 0; Bacteria - 0; Metazoa - 1969; Fungi - 558; Plants - 4626; Viruses - 27; Other Eukaryotes - 921 (source: NCBI BLink). & (reliability: 298.0) & (original description: no original description)


Gene families : OG_42_0000003 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_17390g0010
Cluster HCCA clusters: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
At5g27420 No alias E3 ubiquitin-protein ligase ATL31... 0.03 Orthogroups_2024-Update
Bradi3g60770 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Bradi5g09830 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Brara.A02910.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Brara.F01484.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Brara.H01408.1 No alias regulatory E3 ubiquitin ligase targeted to IRT1 *(IDF1) 0.04 Orthogroups_2024-Update
Brara.I04330.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
GRMZM2G145382 No alias RING/U-box superfamily protein 0.05 Orthogroups_2024-Update
GRMZM2G460958 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Glyma.01G095600 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.03G017500 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.09G214600 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.17G068200 No alias RING/U-box superfamily protein 0.05 Orthogroups_2024-Update
HORVU0Hr1G003000.2 No alias Unknown function 0.04 Orthogroups_2024-Update
LOC_Os04g37740 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.02 Orthogroups_2024-Update
MA_226198g0010 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
MA_9143538g0010 No alias no hits & (original description: no original description) 0.09 Orthogroups_2024-Update
PSME_00003022-RA No alias (at1g72200 : 164.0) RING/U-box superfamily protein;... 0.03 Orthogroups_2024-Update
PSME_00034763-RA No alias (at5g05280 : 85.1) RING/U-box superfamily protein;... 0.02 Orthogroups_2024-Update
Pp1s14_360V6 No alias No description available 0.02 Orthogroups_2024-Update
Seita.5G149000.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
Sobic.003G288401.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Sobic.005G012100.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc01g096650 No alias RING/U-box superfamily protein (AHRD V3.3 *** AT5G07040.1) 0.03 Orthogroups_2024-Update
Solyc04g074820 No alias RING/U-box superfamily protein, putative (AHRD V3.3 ***... 0.02 Orthogroups_2024-Update
Solyc11g006450 No alias RING/U-box superfamily protein (AHRD V3.3 *** A0A061FQW5_THECC) 0.02 Orthogroups_2024-Update
Sopen09g030100 No alias Ring finger domain 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
BP GO:0055114 oxidation-reduction process IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 107 150
No external refs found!