- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : (at4g02750 : 608.0) Tetratricopeptide repeat (TPR)-like superfamily protein; LOCATED IN: mitochondrion; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G09410.1); Has 56089 Blast hits to 14902 proteins in 275 species: Archae - 0; Bacteria - 15; Metazoa - 173; Fungi - 123; Plants - 55165; Viruses - 0; Other Eukaryotes - 613 (source: NCBI BLink). & (q76c99|rf1_orysa : 129.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1216.0) & (original description: no original description)
Gene families : OG_42_0022248 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Picea release: MA_175700g0010 | |
| Cluster | HCCA clusters: Cluster_193 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005488 | binding | IEP | Predicted GO |
| MF | GO:0008270 | zinc ion binding | IEP | Predicted GO |
| MF | GO:0043167 | ion binding | IEP | Predicted GO |
| MF | GO:0043169 | cation binding | IEP | Predicted GO |
| MF | GO:0046872 | metal ion binding | IEP | Predicted GO |
| MF | GO:0046914 | transition metal ion binding | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 248 | 277 |
| IPR002885 | Pentatricopeptide_repeat | 217 | 247 |
| IPR002885 | Pentatricopeptide_repeat | 279 | 308 |
| IPR002885 | Pentatricopeptide_repeat | 341 | 369 |
| IPR002885 | Pentatricopeptide_repeat | 548 | 571 |
| IPR002885 | Pentatricopeptide_repeat | 64 | 88 |
| IPR002885 | Pentatricopeptide_repeat | 93 | 120 |
| IPR002885 | Pentatricopeptide_repeat | 614 | 642 |
| IPR002885 | Pentatricopeptide_repeat | 155 | 185 |
| IPR002885 | Pentatricopeptide_repeat | 310 | 340 |
| IPR002885 | Pentatricopeptide_repeat | 186 | 215 |
| IPR002885 | Pentatricopeptide_repeat | 370 | 415 |
| IPR002885 | Pentatricopeptide_repeat | 473 | 519 |
| IPR002885 | Pentatricopeptide_repeat | 121 | 154 |
| No external refs found! |