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  5. MA_17608g0020

MA_17608g0020


Description : (at4g16740 : 180.0) Encodes an (E,E)-alpha-farnesene synthase in the Col ecotype of Arabidopsis. This enzyme can also catalyze the formation of (E)-beta-ocimene as well as trace amounts of myrcene and other related compounds in vitro. The cytosolic localization of the protein may make it favor (E,E)-alpha-farnesene biosynthesis because the precursor of this product, FPP, is primarily cytosolic. Transcript levels for this gene increase in response to treatment with the jasmonic acid mimic coronalon or in response to the insect <i>Plutella xylostella</i>. TPS03 transcripts can also be detected in flowers. A similar protein from the C24 ecotype with one amino acid change (S267F) has a different substrate specificity.; terpene synthase 03 (TPS03); CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: terpene synthase-like sequence-1,8-cineole (TAIR:AT3G25820.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (p59287|cass_ricco : 179.0) Casbene synthase, chloroplast precursor (EC 4.2.3.8) - Ricinus communis (Castor bean) & (reliability: 360.0) & (original description: no original description)


Gene families : OG_42_0000258 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000258_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_17608g0020
Cluster HCCA clusters: Cluster_188

Target Alias Description ECC score Gene Family Method Actions
Brara.F03314.1 No alias EC_4.2 carbon-oxygen lyase &... 0.03 Orthogroups_2024-Update
Brara.F03315.1 No alias EC_4.2 carbon-oxygen lyase &... 0.02 Orthogroups_2024-Update
GRMZM2G108609 No alias Terpenoid cyclases/Protein prenyltransferases superfamily protein 0.03 Orthogroups_2024-Update
Glyma.09G122500 No alias terpene synthase 03 0.02 Orthogroups_2024-Update
Glyma.20G074400 No alias terpene synthase 03 0.03 Orthogroups_2024-Update
MA_10426551g0010 No alias (p59287|cass_ricco : 248.0) Casbene synthase,... 0.04 Orthogroups_2024-Update
MA_10430954g0010 No alias (at1g61680 : 139.0) terpene synthase 14 (TPS14);... 0.05 Orthogroups_2024-Update
MA_70145g0010 No alias (at4g16740 : 253.0) Encodes an (E,E)-alpha-farnesene... 0.04 Orthogroups_2024-Update
PSME_00002803-RA No alias (p93665|dcs1_goshi : 165.0) (+)-delta-cadinene synthase... 0.03 Orthogroups_2024-Update
PSME_00003263-RA No alias (at4g02780 : 383.0) Catalyzes the conversion of... 0.05 Orthogroups_2024-Update
PSME_00003264-RA No alias (at4g02780 : 395.0) Catalyzes the conversion of... 0.07 Orthogroups_2024-Update
PSME_00003265-RA No alias (at4g02780 : 372.0) Catalyzes the conversion of... 0.04 Orthogroups_2024-Update
PSME_00003483-RA No alias (p93665|dcs1_goshi : 253.0) (+)-delta-cadinene synthase... 0.05 Orthogroups_2024-Update
PSME_00008408-RA No alias (at4g02780 : 401.0) Catalyzes the conversion of... 0.06 Orthogroups_2024-Update
PSME_00009159-RA No alias (p59287|cass_ricco : 229.0) Casbene synthase,... 0.04 Orthogroups_2024-Update
PSME_00013270-RA No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update
PSME_00013344-RA No alias (p93665|dcs1_goshi : 255.0) (+)-delta-cadinene synthase... 0.04 Orthogroups_2024-Update
PSME_00023685-RA No alias (p59287|cass_ricco : 257.0) Casbene synthase,... 0.07 Orthogroups_2024-Update
PSME_00024100-RA No alias (at4g16740 : 219.0) Encodes an (E,E)-alpha-farnesene... 0.03 Orthogroups_2024-Update
PSME_00027421-RA No alias (o04408|ksa_pea : 118.0) Ent-kaurene synthase A,... 0.03 Orthogroups_2024-Update
PSME_00030201-RA No alias (at4g02780 : 365.0) Catalyzes the conversion of... 0.11 Orthogroups_2024-Update
PSME_00033301-RA No alias (p59287|cass_ricco : 246.0) Casbene synthase,... 0.03 Orthogroups_2024-Update
PSME_00034478-RA No alias (at3g25810 : 192.0) Terpenoid cyclases/Protein... 0.05 Orthogroups_2024-Update
PSME_00034701-RA No alias (p59287|cass_ricco : 249.0) Casbene synthase,... 0.04 Orthogroups_2024-Update
PSME_00041351-RA No alias (at1g70080 : 113.0) Terpenoid cyclases/Protein... 0.06 Orthogroups_2024-Update
PSME_00044370-RA No alias (at4g16730 : 128.0) In the Col ecotype, no functional... 0.03 Orthogroups_2024-Update
Potri.019G022900 No alias terpene synthase-like sequence-1,8-cineole 0.03 Orthogroups_2024-Update
Sopen01g048290 No alias Terpene synthase family, metal binding domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEA InterProScan predictions
MF GO:0010333 terpene synthase activity IEA InterProScan predictions
MF GO:0016829 lyase activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Predicted GO
MF GO:0010181 FMN binding IEP Predicted GO
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Predicted GO
MF GO:0016846 carbon-sulfur lyase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR005630 Terpene_synthase_metal-bd 92 356
No external refs found!