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  5. MA_179801g0020

MA_179801g0020


Description : (at4g02750 : 595.0) Tetratricopeptide repeat (TPR)-like superfamily protein; LOCATED IN: mitochondrion; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G09410.1); Has 56089 Blast hits to 14902 proteins in 275 species: Archae - 0; Bacteria - 15; Metazoa - 173; Fungi - 123; Plants - 55165; Viruses - 0; Other Eukaryotes - 613 (source: NCBI BLink). & (q76c99|rf1_orysa : 182.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1190.0) & (original description: no original description)


Gene families : OG_42_0002876 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002876_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_179801g0020
Cluster HCCA clusters: Cluster_173

Target Alias Description ECC score Gene Family Method Actions
MA_91200g0010 No alias (at3g23020 : 522.0) Tetratricopeptide repeat (TPR)-like... 0.04 Orthogroups_2024-Update
PSME_00014001-RA No alias (at3g23020 : 705.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
Seita.2G311000.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.001G495400.1 No alias Unknown function 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000774 adenyl-nucleotide exchange factor activity IEP Predicted GO
CC GO:0005759 mitochondrial matrix IEP Predicted GO
BP GO:0006457 protein folding IEP Predicted GO
BP GO:0009141 nucleoside triphosphate metabolic process IEP Predicted GO
BP GO:0009143 nucleoside triphosphate catabolic process IEP Predicted GO
BP GO:0019439 aromatic compound catabolic process IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
BP GO:0034404 nucleobase-containing small molecule biosynthetic process IEP Predicted GO
BP GO:0034655 nucleobase-containing compound catabolic process IEP Predicted GO
MF GO:0042802 identical protein binding IEP Predicted GO
MF GO:0042803 protein homodimerization activity IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
BP GO:0044270 cellular nitrogen compound catabolic process IEP Predicted GO
CC GO:0044429 mitochondrial part IEP Predicted GO
BP GO:0046434 organophosphate catabolic process IEP Predicted GO
BP GO:0046700 heterocycle catabolic process IEP Predicted GO
MF GO:0047429 nucleoside-triphosphate diphosphatase activity IEP Predicted GO
MF GO:0051087 chaperone binding IEP Predicted GO
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Predicted GO
MF GO:0060590 ATPase regulator activity IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
BP GO:1901292 nucleoside phosphate catabolic process IEP Predicted GO
BP GO:1901361 organic cyclic compound catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 566 613
IPR002885 Pentatricopeptide_repeat 108 155
IPR002885 Pentatricopeptide_repeat 465 511
IPR002885 Pentatricopeptide_repeat 208 255
IPR032867 DYW_dom 739 828
IPR002885 Pentatricopeptide_repeat 282 307
IPR002885 Pentatricopeptide_repeat 709 735
IPR002885 Pentatricopeptide_repeat 82 107
IPR002885 Pentatricopeptide_repeat 343 370
IPR002885 Pentatricopeptide_repeat 374 403
IPR002885 Pentatricopeptide_repeat 539 565
IPR002885 Pentatricopeptide_repeat 640 664
IPR002885 Pentatricopeptide_repeat 312 342
IPR002885 Pentatricopeptide_repeat 405 434
No external refs found!