Description : (at5g62940 : 141.0) HCA2 induces the formation of interfascicular cambium and regulates vascular tissue development in the aerial parts of the plant. Evidence from both gain of function and dominant negative alleles.; HIGH CAMBIAL ACTIVITY2 (HCA2); CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: TARGET OF MONOPTEROS 6 (TAIR:AT5G60200.1); Has 1915 Blast hits to 1778 proteins in 135 species: Archae - 0; Bacteria - 49; Metazoa - 135; Fungi - 61; Plants - 1116; Viruses - 0; Other Eukaryotes - 554 (source: NCBI BLink). & (o24463|pbf_maize : 128.0) Dof zinc finger protein PBF (Prolamin box-binding factor) - Zea mays (Maize) & (reliability: 282.0) & (original description: no original description)
Gene families : OG_42_0000027 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000027_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Picea release: MA_18267g0010 | |
Cluster | HCCA clusters: Cluster_212 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
A4A49_04752 | No alias | dof zinc finger protein dof3.5 | 0.02 | Orthogroups_2024-Update | |
A4A49_33558 | No alias | dof zinc finger protein dof1.4 | 0.02 | Orthogroups_2024-Update | |
A4A49_33562 | No alias | dof zinc finger protein dof4.6 | 0.03 | Orthogroups_2024-Update | |
At4g00940 | No alias | Dof zinc finger protein DOF4.1... | 0.03 | Orthogroups_2024-Update | |
At4g38000 | No alias | DOF4.7 [Source:UniProtKB/TrEMBL;Acc:A0A178V5K8] | 0.03 | Orthogroups_2024-Update | |
At5g62940 | No alias | HCA2 [Source:UniProtKB/TrEMBL;Acc:A0A178UF22] | 0.03 | Orthogroups_2024-Update | |
Bradi3g25670 | No alias | cycling DOF factor 1 | 0.02 | Orthogroups_2024-Update | |
Bradi4g04260 | No alias | OBF-binding protein 3 | 0.02 | Orthogroups_2024-Update | |
Brara.B00052.1 | No alias | transcription factor *(DOF) | 0.03 | Orthogroups_2024-Update | |
Brara.D00980.1 | No alias | transcription factor *(DOF) | 0.03 | Orthogroups_2024-Update | |
Brara.E02083.1 | No alias | transcription factor *(DOF) | 0.03 | Orthogroups_2024-Update | |
Brara.I00633.1 | No alias | transcription factor *(DOF) | 0.03 | Orthogroups_2024-Update | |
Brara.I00826.1 | No alias | transcription factor *(DOF) | 0.03 | Orthogroups_2024-Update | |
Brara.I01305.1 | No alias | transcription factor *(DOF) | 0.03 | Orthogroups_2024-Update | |
Cre12.g521150 | No alias | cycling DOF factor 2 | 0.02 | Orthogroups_2024-Update | |
GRMZM5G880268 | No alias | OBF-binding protein 3 | 0.03 | Orthogroups_2024-Update | |
Glyma.10G173700 | No alias | Dof-type zinc finger DNA-binding family protein | 0.03 | Orthogroups_2024-Update | |
Glyma.15G022800 | No alias | DOF zinc finger protein 1 | 0.03 | Orthogroups_2024-Update | |
Glyma.15G215500 | No alias | cycling DOF factor 1 | 0.03 | Orthogroups_2024-Update | |
Glyma.18G150800 | No alias | Dof-type zinc finger DNA-binding family protein | 0.03 | Orthogroups_2024-Update | |
HORVU1Hr1G074140.1 | No alias | transcription factor *(DOF) | 0.03 | Orthogroups_2024-Update | |
HORVU5Hr1G021290.1 | No alias | transcription factor *(DOF) | 0.04 | Orthogroups_2024-Update | |
LOC_Os01g17000 | No alias | expressed protein | 0.02 | Orthogroups_2024-Update | |
LOC_Os02g45200 | No alias | dof zinc finger domain containing protein, putative, expressed | 0.02 | Orthogroups_2024-Update | |
LOC_Os08g38220 | No alias | dof zinc finger domain containing protein, putative, expressed | 0.04 | Orthogroups_2024-Update | |
LOC_Os12g38200 | No alias | dof zinc finger domain containing protein, putative, expressed | 0.03 | Orthogroups_2024-Update | |
PSME_00056872-RA | No alias | (at5g60200 : 116.0) Encodes a Dof-type transcription... | 0.03 | Orthogroups_2024-Update | |
Potri.019G040700 | No alias | cycling DOF factor 3 | 0.03 | Orthogroups_2024-Update | |
Pp1s124_139V6 | No alias | zinc finger | 0.02 | Orthogroups_2024-Update | |
Seita.3G371900.1 | No alias | transcription factor *(DOF) | 0.02 | Orthogroups_2024-Update | |
Seita.9G259300.1 | No alias | transcription factor *(DOF) | 0.02 | Orthogroups_2024-Update | |
Sobic.001G078700.1 | No alias | transcription factor *(DOF) | 0.04 | Orthogroups_2024-Update | |
Sobic.001G489900.1 | No alias | transcription factor *(DOF) | 0.04 | Orthogroups_2024-Update | |
Sobic.003G033500.1 | No alias | transcription factor *(DOF) | 0.02 | Orthogroups_2024-Update | |
Sobic.007G223200.2 | No alias | transcription factor *(DOF) | 0.02 | Orthogroups_2024-Update | |
Solyc02g090310 | No alias | Dof zinc finger protein (AHRD V3.3 *-* W9QGW0_9ROSA) | 0.03 | Orthogroups_2024-Update | |
Solyc06g005130 | No alias | Dof zinc finger protein (AHRD V3.3 *** W9RMR9_9ROSA) | 0.03 | Orthogroups_2024-Update | |
Solyc06g062520 | No alias | Dof zinc finger protein (AHRD V3.3 *** W9QMS6_9ROSA) | 0.02 | Orthogroups_2024-Update | |
Sopen02g015430 | No alias | Dof domain, zinc finger | 0.03 | Orthogroups_2024-Update | |
Sopen02g022800 | No alias | Dof domain, zinc finger | 0.03 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003677 | DNA binding | IEA | InterProScan predictions |
BP | GO:0006355 | regulation of transcription, DNA-templated | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
CC | GO:0000145 | exocyst | IEP | Predicted GO |
BP | GO:0000394 | RNA splicing, via endonucleolytic cleavage and ligation | IEP | Predicted GO |
BP | GO:0006388 | tRNA splicing, via endonucleolytic cleavage and ligation | IEP | Predicted GO |
BP | GO:0006887 | exocytosis | IEP | Predicted GO |
BP | GO:0008033 | tRNA processing | IEP | Predicted GO |
BP | GO:0008380 | RNA splicing | IEP | Predicted GO |
CC | GO:0016021 | integral component of membrane | IEP | Predicted GO |
CC | GO:0031224 | intrinsic component of membrane | IEP | Predicted GO |
BP | GO:0032940 | secretion by cell | IEP | Predicted GO |
BP | GO:0034470 | ncRNA processing | IEP | Predicted GO |
CC | GO:0044425 | membrane part | IEP | Predicted GO |
CC | GO:0044448 | cell cortex part | IEP | Predicted GO |
BP | GO:0046903 | secretion | IEP | Predicted GO |
CC | GO:0099023 | tethering complex | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR003851 | Znf_Dof | 79 | 136 |
No external refs found! |