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  5. MA_18267g0010

MA_18267g0010


Description : (at5g62940 : 141.0) HCA2 induces the formation of interfascicular cambium and regulates vascular tissue development in the aerial parts of the plant. Evidence from both gain of function and dominant negative alleles.; HIGH CAMBIAL ACTIVITY2 (HCA2); CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: TARGET OF MONOPTEROS 6 (TAIR:AT5G60200.1); Has 1915 Blast hits to 1778 proteins in 135 species: Archae - 0; Bacteria - 49; Metazoa - 135; Fungi - 61; Plants - 1116; Viruses - 0; Other Eukaryotes - 554 (source: NCBI BLink). & (o24463|pbf_maize : 128.0) Dof zinc finger protein PBF (Prolamin box-binding factor) - Zea mays (Maize) & (reliability: 282.0) & (original description: no original description)


Gene families : OG_42_0000027 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000027_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_18267g0010
Cluster HCCA clusters: Cluster_212

Target Alias Description ECC score Gene Family Method Actions
A4A49_04752 No alias dof zinc finger protein dof3.5 0.02 Orthogroups_2024-Update
A4A49_33558 No alias dof zinc finger protein dof1.4 0.02 Orthogroups_2024-Update
A4A49_33562 No alias dof zinc finger protein dof4.6 0.03 Orthogroups_2024-Update
At4g00940 No alias Dof zinc finger protein DOF4.1... 0.03 Orthogroups_2024-Update
At4g38000 No alias DOF4.7 [Source:UniProtKB/TrEMBL;Acc:A0A178V5K8] 0.03 Orthogroups_2024-Update
At5g62940 No alias HCA2 [Source:UniProtKB/TrEMBL;Acc:A0A178UF22] 0.03 Orthogroups_2024-Update
Bradi3g25670 No alias cycling DOF factor 1 0.02 Orthogroups_2024-Update
Bradi4g04260 No alias OBF-binding protein 3 0.02 Orthogroups_2024-Update
Brara.B00052.1 No alias transcription factor *(DOF) 0.03 Orthogroups_2024-Update
Brara.D00980.1 No alias transcription factor *(DOF) 0.03 Orthogroups_2024-Update
Brara.E02083.1 No alias transcription factor *(DOF) 0.03 Orthogroups_2024-Update
Brara.I00633.1 No alias transcription factor *(DOF) 0.03 Orthogroups_2024-Update
Brara.I00826.1 No alias transcription factor *(DOF) 0.03 Orthogroups_2024-Update
Brara.I01305.1 No alias transcription factor *(DOF) 0.03 Orthogroups_2024-Update
Cre12.g521150 No alias cycling DOF factor 2 0.02 Orthogroups_2024-Update
GRMZM5G880268 No alias OBF-binding protein 3 0.03 Orthogroups_2024-Update
Glyma.10G173700 No alias Dof-type zinc finger DNA-binding family protein 0.03 Orthogroups_2024-Update
Glyma.15G022800 No alias DOF zinc finger protein 1 0.03 Orthogroups_2024-Update
Glyma.15G215500 No alias cycling DOF factor 1 0.03 Orthogroups_2024-Update
Glyma.18G150800 No alias Dof-type zinc finger DNA-binding family protein 0.03 Orthogroups_2024-Update
HORVU1Hr1G074140.1 No alias transcription factor *(DOF) 0.03 Orthogroups_2024-Update
HORVU5Hr1G021290.1 No alias transcription factor *(DOF) 0.04 Orthogroups_2024-Update
LOC_Os01g17000 No alias expressed protein 0.02 Orthogroups_2024-Update
LOC_Os02g45200 No alias dof zinc finger domain containing protein, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os08g38220 No alias dof zinc finger domain containing protein, putative, expressed 0.04 Orthogroups_2024-Update
LOC_Os12g38200 No alias dof zinc finger domain containing protein, putative, expressed 0.03 Orthogroups_2024-Update
PSME_00056872-RA No alias (at5g60200 : 116.0) Encodes a Dof-type transcription... 0.03 Orthogroups_2024-Update
Potri.019G040700 No alias cycling DOF factor 3 0.03 Orthogroups_2024-Update
Pp1s124_139V6 No alias zinc finger 0.02 Orthogroups_2024-Update
Seita.3G371900.1 No alias transcription factor *(DOF) 0.02 Orthogroups_2024-Update
Seita.9G259300.1 No alias transcription factor *(DOF) 0.02 Orthogroups_2024-Update
Sobic.001G078700.1 No alias transcription factor *(DOF) 0.04 Orthogroups_2024-Update
Sobic.001G489900.1 No alias transcription factor *(DOF) 0.04 Orthogroups_2024-Update
Sobic.003G033500.1 No alias transcription factor *(DOF) 0.02 Orthogroups_2024-Update
Sobic.007G223200.2 No alias transcription factor *(DOF) 0.02 Orthogroups_2024-Update
Solyc02g090310 No alias Dof zinc finger protein (AHRD V3.3 *-* W9QGW0_9ROSA) 0.03 Orthogroups_2024-Update
Solyc06g005130 No alias Dof zinc finger protein (AHRD V3.3 *** W9RMR9_9ROSA) 0.03 Orthogroups_2024-Update
Solyc06g062520 No alias Dof zinc finger protein (AHRD V3.3 *** W9QMS6_9ROSA) 0.02 Orthogroups_2024-Update
Sopen02g015430 No alias Dof domain, zinc finger 0.03 Orthogroups_2024-Update
Sopen02g022800 No alias Dof domain, zinc finger 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
BP GO:0006355 regulation of transcription, DNA-templated IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Predicted GO
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP Predicted GO
BP GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation IEP Predicted GO
BP GO:0006887 exocytosis IEP Predicted GO
BP GO:0008033 tRNA processing IEP Predicted GO
BP GO:0008380 RNA splicing IEP Predicted GO
CC GO:0016021 integral component of membrane IEP Predicted GO
CC GO:0031224 intrinsic component of membrane IEP Predicted GO
BP GO:0032940 secretion by cell IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
CC GO:0044425 membrane part IEP Predicted GO
CC GO:0044448 cell cortex part IEP Predicted GO
BP GO:0046903 secretion IEP Predicted GO
CC GO:0099023 tethering complex IEP Predicted GO
InterPro domains Description Start Stop
IPR003851 Znf_Dof 79 136
No external refs found!