MA_19350g0010

Description : (at3g48930 : 247.0) embryo defective 1080 (EMB1080); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, embryo development ending in seed dormancy; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, cell wall, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Ribosomal protein S17, archaeal (InterPro:IPR019978), Ribosomal protein S17, conserved site (InterPro:IPR019979), Ribosomal protein S17 (InterPro:IPR000266); BEST Arabidopsis thaliana protein match is: ribosomal protein S11-beta (TAIR:AT5G23740.1); Has 1290 Blast hits to 1288 proteins in 469 species: Archae - 240; Bacteria - 242; Metazoa - 305; Fungi - 148; Plants - 140; Viruses - 0; Other Eukaryotes - 215 (source: NCBI BLink). & (p17093|rs11_soybn : 246.0) 40S ribosomal protein S11 - Glycine max (Soybean) & (reliability: 494.0) & (original description: no original description)

Gene families : OG_42_0002289 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002289_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Picea release: MA_19350g0010
Cluster	HCCA clusters: Cluster_111

Target	Alias	Description	ECC score	Gene Family Method
268639	No alias	Nucleic acid-binding, OB-fold-like protein	0.04	Orthogroups_2024-Update
A4A49_60485	No alias	40s ribosomal protein s11	0.08	Orthogroups_2024-Update
At3g48930	No alias	40S ribosomal protein S11-1...	0.03	Orthogroups_2024-Update
At4g30800	No alias	40S ribosomal protein S11-2...	0.04	Orthogroups_2024-Update
Bradi3g48600	No alias	Nucleic acid-binding, OB-fold-like protein	0.03	Orthogroups_2024-Update
Bradi5g21630	No alias	Nucleic acid-binding, OB-fold-like protein	0.1	Orthogroups_2024-Update
Brara.A02200.1	No alias	component *(uS17) of small ribosomal-subunit (SSU) proteome	0.06	Orthogroups_2024-Update
Brara.B03705.1	No alias	component *(uS17) of small ribosomal-subunit (SSU) proteome	0.03	Orthogroups_2024-Update
Brara.F01642.1	No alias	component *(uS17) of small ribosomal-subunit (SSU) proteome	0.09	Orthogroups_2024-Update
Brara.F02607.1	No alias	component *(uS17) of small ribosomal-subunit (SSU) proteome	0.06	Orthogroups_2024-Update
Brara.I00599.1	No alias	component *(uS17) of small ribosomal-subunit (SSU) proteome	0.08	Orthogroups_2024-Update
Cre12.g514500	No alias	Nucleic acid-binding, OB-fold-like protein	0.07	Orthogroups_2024-Update
GRMZM2G019325	No alias	ribosomal protein S11-beta	0.08	Orthogroups_2024-Update
GRMZM2G044800	No alias	ribosomal protein S11-beta	0.04	Orthogroups_2024-Update
Glyma.09G094200	No alias	ribosomal protein S11-beta	0.02	Orthogroups_2024-Update
Glyma.13G165200	No alias	ribosomal protein S11-beta	0.07	Orthogroups_2024-Update
HORVU2Hr1G099230.8	No alias	component *(uS17) of small ribosomal-subunit (SSU) proteome	0.04	Orthogroups_2024-Update
Kfl00435_0080	kfl00435_0080_v1.1	(p17093\|rs11_soybn : 243.0) 40S ribosomal protein S11 -...	0.03	Orthogroups_2024-Update
LOC_Os04g52361	No alias	ribosomal protein S17, putative, expressed	0.03	Orthogroups_2024-Update
Mp6g10500.1	No alias	component RPS11 of SSU proteome	0.05	Orthogroups_2024-Update
Potri.002G140400	No alias	ribosomal protein S11-beta	0.05	Orthogroups_2024-Update
Potri.014G053300	No alias	ribosomal protein S11-beta	0.05	Orthogroups_2024-Update
Potri.018G115400	No alias	ribosomal protein S11-beta	0.04	Orthogroups_2024-Update
Pp1s21_269V6	No alias	40s ribosomal protein s11	0.12	Orthogroups_2024-Update
Pp1s30_89V6	No alias	40s ribosomal protein s11	0.03	Orthogroups_2024-Update
Pp1s51_307V6	No alias	40s ribosomal protein s11	0.04	Orthogroups_2024-Update
Pp1s79_58V6	No alias	40s ribosomal protein s11	0.11	Orthogroups_2024-Update
Seita.1G231100.1	No alias	component *(uS17) of small ribosomal-subunit (SSU) proteome	0.12	Orthogroups_2024-Update
Seita.7G157100.1	No alias	component *(uS17) of small ribosomal-subunit (SSU) proteome	0.07	Orthogroups_2024-Update
Seita.7G234800.1	No alias	component *(uS17) of small ribosomal-subunit (SSU) proteome	0.06	Orthogroups_2024-Update
Sobic.004G213200.1	No alias	component *(uS17) of small ribosomal-subunit (SSU) proteome	0.09	Orthogroups_2024-Update
Sobic.006G138100.1	No alias	component *(uS17) of small ribosomal-subunit (SSU) proteome	0.1	Orthogroups_2024-Update
Sobic.006G213000.1	No alias	component *(uS17) of small ribosomal-subunit (SSU) proteome	0.11	Orthogroups_2024-Update
Solyc06g073790	No alias	40s ribosomal protein S11 (AHRD V3.3 *** K7XKQ3_SOLTU)	0.09	Orthogroups_2024-Update
Solyc06g073800	No alias	40s ribosomal protein S11 (AHRD V3.3 *** K7XKQ3_SOLTU)	0.09	Orthogroups_2024-Update
Solyc12g042080	No alias	40s ribosomal protein S11 (AHRD V3.3 *** K7XKQ3_SOLTU)	0.08	Orthogroups_2024-Update
Sopen06g030190	No alias	Ribosomal protein S17	0.06	Orthogroups_2024-Update
Sopen12g021180	No alias	Ribosomal protein S17	0.08	Orthogroups_2024-Update
evm.model.contig_3727.5	No alias	(at4g30800 : 197.0) Nucleic acid-binding, OB-fold-like...	0.1	Orthogroups_2024-Update
evm.model.tig00000551.22	No alias	(p17093\|rs11_soybn : 211.0) 40S ribosomal protein S11 -...	0.14	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	InterProScan predictions
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular	IEA	InterProScan predictions
CC	GO:0005840	ribosome	IEA	InterProScan predictions
BP	GO:0006412	translation	IEA	InterProScan predictions
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000276	mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)	IEP	Predicted GO
MF	GO:0001882	nucleoside binding	IEP	Predicted GO
MF	GO:0001883	purine nucleoside binding	IEP	Predicted GO
MF	GO:0003723	RNA binding	IEP	Predicted GO
MF	GO:0003746	translation elongation factor activity	IEP	Predicted GO
MF	GO:0005096	GTPase activator activity	IEP	Predicted GO
MF	GO:0005525	GTP binding	IEP	Predicted GO
CC	GO:0005667	transcription factor complex	IEP	Predicted GO
CC	GO:0005759	mitochondrial matrix	IEP	Predicted GO
CC	GO:0005783	endoplasmic reticulum	IEP	Predicted GO
CC	GO:0005956	protein kinase CK2 complex	IEP	Predicted GO
BP	GO:0006351	transcription, DNA-templated	IEP	Predicted GO
BP	GO:0006414	translational elongation	IEP	Predicted GO
MF	GO:0008135	translation factor activity, RNA binding	IEP	Predicted GO
BP	GO:0015672	monovalent inorganic cation transport	IEP	Predicted GO
BP	GO:0015985	energy coupled proton transport, down electrochemical gradient	IEP	Predicted GO
BP	GO:0015986	ATP synthesis coupled proton transport	IEP	Predicted GO
CC	GO:0016469	proton-transporting two-sector ATPase complex	IEP	Predicted GO
CC	GO:0016471	vacuolar proton-transporting V-type ATPase complex	IEP	Predicted GO
BP	GO:0018130	heterocycle biosynthetic process	IEP	Predicted GO
MF	GO:0019001	guanyl nucleotide binding	IEP	Predicted GO
MF	GO:0019207	kinase regulator activity	IEP	Predicted GO
BP	GO:0019438	aromatic compound biosynthetic process	IEP	Predicted GO
MF	GO:0019843	rRNA binding	IEP	Predicted GO
MF	GO:0019887	protein kinase regulator activity	IEP	Predicted GO
CC	GO:0031974	membrane-enclosed lumen	IEP	Predicted GO
MF	GO:0032549	ribonucleoside binding	IEP	Predicted GO
MF	GO:0032550	purine ribonucleoside binding	IEP	Predicted GO
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Predicted GO
BP	GO:0032774	RNA biosynthetic process	IEP	Predicted GO
CC	GO:0033176	proton-transporting V-type ATPase complex	IEP	Predicted GO
BP	GO:0034220	ion transmembrane transport	IEP	Predicted GO
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	Predicted GO
CC	GO:0043233	organelle lumen	IEP	Predicted GO
CC	GO:0044429	mitochondrial part	IEP	Predicted GO
CC	GO:0044437	vacuolar part	IEP	Predicted GO
CC	GO:0044455	mitochondrial membrane part	IEP	Predicted GO
CC	GO:0045263	proton-transporting ATP synthase complex, coupling factor F(o)	IEP	Predicted GO
CC	GO:0070013	intracellular organelle lumen	IEP	Predicted GO
BP	GO:0097659	nucleic acid-templated transcription	IEP	Predicted GO
BP	GO:0098655	cation transmembrane transport	IEP	Predicted GO
BP	GO:0098660	inorganic ion transmembrane transport	IEP	Predicted GO
BP	GO:0098662	inorganic cation transmembrane transport	IEP	Predicted GO
CC	GO:0098796	membrane protein complex	IEP	Predicted GO
CC	GO:0098798	mitochondrial protein complex	IEP	Predicted GO
CC	GO:0098800	inner mitochondrial membrane protein complex	IEP	Predicted GO
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	Predicted GO
BP	GO:1902600	proton transmembrane transport	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR000266	Ribosomal_S17/S11	74	142
IPR032440	Ribosomal_S11_N	4	72

External Links

No external refs found!

MA_19350g0010

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation