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  5. MA_20325g0010

MA_20325g0010


Description : (at5g15270 : 298.0) RNA-binding KH domain-containing protein; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup (InterPro:IPR018111), K Homology (InterPro:IPR004087), K Homology, type 1 (InterPro:IPR004088); BEST Arabidopsis thaliana protein match is: RNA-binding KH domain-containing protein (TAIR:AT1G14170.3); Has 5625 Blast hits to 2559 proteins in 215 species: Archae - 0; Bacteria - 48; Metazoa - 3662; Fungi - 737; Plants - 967; Viruses - 0; Other Eukaryotes - 211 (source: NCBI BLink). & (reliability: 596.0) & (original description: no original description)


Gene families : OG_42_0000643 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000643_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_20325g0010
Cluster HCCA clusters: Cluster_59

Target Alias Description ECC score Gene Family Method Actions
Bradi3g29870 No alias RNA-binding KH domain-containing protein 0.03 Orthogroups_2024-Update
GRMZM5G871419 No alias RNA-binding KH domain-containing protein 0.03 Orthogroups_2024-Update
Glyma.04G088100 No alias RNA-binding KH domain-containing protein 0.02 Orthogroups_2024-Update
Glyma.09G235900 No alias RNA-binding KH domain-containing protein 0.03 Orthogroups_2024-Update
Glyma.15G058400 No alias RNA-binding KH domain-containing protein 0.03 Orthogroups_2024-Update
Glyma.18G261100 No alias RNA-binding KH domain-containing protein 0.03 Orthogroups_2024-Update
PSME_00004511-RA No alias (at5g15270 : 293.0) RNA-binding KH domain-containing... 0.03 Orthogroups_2024-Update
PSME_00037484-RA No alias (at5g53060 : 276.0) RNA-binding KH domain-containing... 0.05 Orthogroups_2024-Update
Pp1s36_86V6 No alias nucleic acid binding protein 0.02 Orthogroups_2024-Update
Sopen02g016390 No alias KH domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000428 DNA-directed RNA polymerase complex IEP Predicted GO
MF GO:0003743 translation initiation factor activity IEP Predicted GO
MF
GO:0003857 3-hydroxyacyl-CoA dehydrogenase activity IEP Predicted GO MF GO:0003924 GTPase activity IEP Predicted GO MF GO:0004455 ketol-acid reductoisomerase activity IEP Predicted GO MF GO:0004576 oligosaccharyl transferase activity IEP Predicted GO MF GO:0005515 protein binding IEP Predicted GO CC GO:0005575 cellular_component IEP Predicted GO CC GO:0005634 nucleus IEP Predicted GO CC GO:0005665 RNA polymerase II, core complex IEP Predicted GO CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Predicted GO BP GO:0006366 transcription by RNA polymerase II IEP Predicted GO BP GO:0006413 translational initiation IEP Predicted GO BP GO:0006606 protein import into nucleus IEP Predicted GO BP GO:0006810 transport IEP Predicted GO BP GO:0006886 intracellular protein transport IEP Predicted GO BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Predicted GO BP GO:0006913 nucleocytoplasmic transport IEP Predicted GO BP GO:0008104 protein localization IEP Predicted GO MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO MF GO:0008536 Ran GTPase binding IEP Predicted GO MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Predicted GO BP GO:0009081 branched-chain amino acid metabolic process IEP Predicted GO BP GO:0009082 branched-chain amino acid biosynthetic process IEP Predicted GO BP GO:0015031 protein transport IEP Predicted GO BP GO:0015833 peptide transport IEP Predicted GO BP GO:0016192 vesicle-mediated transport IEP Predicted GO MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Predicted GO MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Predicted GO MF GO:0017016 Ras GTPase binding IEP Predicted GO BP GO:0017038 protein import IEP Predicted GO MF GO:0019899 enzyme binding IEP Predicted GO CC GO:0030117 membrane coat IEP Predicted GO CC GO:0030119 AP-type membrane coat adaptor complex IEP Predicted GO CC GO:0030120 vesicle coat IEP Predicted GO CC GO:0030126 COPI vesicle coat IEP Predicted GO CC GO:0030127 COPII vesicle coat IEP Predicted GO CC GO:0030131 clathrin adaptor complex IEP Predicted GO CC GO:0030880 RNA polymerase complex IEP Predicted GO MF GO:0031267 small GTPase binding IEP Predicted GO MF GO:0031369 translation initiation factor binding IEP Predicted GO CC GO:0032991 protein-containing complex IEP Predicted GO BP GO:0033036 macromolecule localization IEP Predicted GO BP GO:0033365 protein localization to organelle IEP Predicted GO BP GO:0034504 protein localization to nucleus IEP Predicted GO BP GO:0034613 cellular protein localization IEP Predicted GO BP GO:0042886 amide transport IEP Predicted GO CC GO:0043227 membrane-bounded organelle IEP Predicted GO CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO CC GO:0044422 organelle part IEP Predicted GO CC GO:0044424 intracellular part IEP Predicted GO CC GO:0044425 membrane part IEP Predicted GO CC GO:0044431 Golgi apparatus part IEP Predicted GO CC GO:0044433 cytoplasmic vesicle part IEP Predicted GO CC GO:0044444 cytoplasmic part IEP Predicted GO CC GO:0044446 intracellular organelle part IEP Predicted GO CC GO:0044464 cell part IEP Predicted GO BP GO:0045184 establishment of protein localization IEP Predicted GO BP GO:0046907 intracellular transport IEP Predicted GO BP GO:0048193 Golgi vesicle transport IEP Predicted GO MF GO:0051020 GTPase binding IEP Predicted GO BP GO:0051169 nuclear transport IEP Predicted GO BP GO:0051170 import into nucleus IEP Predicted GO BP GO:0051179 localization IEP Predicted GO BP GO:0051234 establishment of localization IEP Predicted GO BP GO:0051641 cellular localization IEP Predicted GO BP GO:0051649 establishment of localization in cell IEP Predicted GO CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP Predicted GO MF GO:0061608 nuclear import signal receptor activity IEP Predicted GO CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Predicted GO BP GO:0070727 cellular macromolecule localization IEP Predicted GO BP GO:0071702 organic substance transport IEP Predicted GO BP GO:0071705 nitrogen compound transport IEP Predicted GO BP GO:0072594 establishment of protein localization to organelle IEP Predicted GO CC GO:0098796 membrane protein complex IEP Predicted GO MF GO:0140104 molecular carrier activity IEP Predicted GO MF GO:0140142 nucleocytoplasmic carrier activity IEP Predicted GO
InterPro domains Description Start Stop
IPR004088 KH_dom_type_1 221 289
IPR004088 KH_dom_type_1 656 695
IPR004088 KH_dom_type_1 475 542
IPR004088 KH_dom_type_1 105 159
IPR004088 KH_dom_type_1 392 443
No external refs found!