Description : (at1g11290 : 522.0) Pentatricopeptide Repeat Protein containing the DYW motif. Required for editing of multiple plastid transcripts. Endonuclease activity.; CHLORORESPIRATORY REDUCTION22 (CRR22); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G57430.1); Has 48258 Blast hits to 14436 proteins in 289 species: Archae - 1; Bacteria - 2; Metazoa - 166; Fungi - 164; Plants - 47192; Viruses - 0; Other Eukaryotes - 733 (source: NCBI BLink). & (q76c99|rf1_orysa : 97.1) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 948.0) & (original description: no original description)
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Picea release: MA_20746g0010 | |
Cluster | HCCA clusters: Cluster_106 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
118230 | No alias | mitochondrial editing factor 22 | 0.03 | Orthogroups_2024-Update | |
At2g34400 | No alias | Pentatricopeptide repeat-containing protein At2g34400... | 0.03 | Orthogroups_2024-Update | |
At3g16610 | No alias | Pentatricopeptide repeat-containing protein At3g16610... | 0.04 | Orthogroups_2024-Update | |
At4g01030 | No alias | Pentatricopeptide repeat-containing protein At4g01030,... | 0.03 | Orthogroups_2024-Update | |
At4g14170 | No alias | Pentatricopeptide repeat-containing protein At4g14170... | 0.03 | Orthogroups_2024-Update | |
Brara.E01751.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Brara.F01619.1 | No alias | RNA editing factor *(ECD1) | 0.03 | Orthogroups_2024-Update | |
GRMZM2G045154 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.08G213800 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.09G286100 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
HORVU0Hr1G015630.5 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
HORVU3Hr1G023070.1 | No alias | RNA editing factor *(OTP81) | 0.02 | Orthogroups_2024-Update | |
HORVU3Hr1G023090.1 | No alias | RNA editing factor *(OTP81) | 0.02 | Orthogroups_2024-Update | |
LOC_Os03g04390 | No alias | pentatricopeptide, putative, expressed | 0.02 | Orthogroups_2024-Update | |
LOC_Os07g15570 | No alias | pentatricopeptide, putative, expressed | 0.02 | Orthogroups_2024-Update | |
LOC_Os08g42610 | No alias | pentatricopeptide, putative, expressed | 0.03 | Orthogroups_2024-Update | |
PSME_00000625-RA | No alias | (at3g09040 : 618.0) Pentatricopeptide repeat (PPR)... | 0.04 | Orthogroups_2024-Update | |
PSME_00002641-RA | No alias | (at1g11290 : 548.0) Pentatricopeptide Repeat Protein... | 0.03 | Orthogroups_2024-Update | |
PSME_00005432-RA | No alias | (at1g11290 : 677.0) Pentatricopeptide Repeat Protein... | 0.03 | Orthogroups_2024-Update | |
PSME_00009521-RA | No alias | (at4g18750 : 696.0) Encodes a pentatricopeptide (PPR)... | 0.03 | Orthogroups_2024-Update | |
PSME_00013106-RA | No alias | (at4g13650 : 681.0) Pentatricopeptide repeat (PPR)... | 0.03 | Orthogroups_2024-Update | |
PSME_00046650-RA | No alias | (at4g21300 : 573.0) Tetratricopeptide repeat (TPR)-like... | 0.03 | Orthogroups_2024-Update | |
PSME_00056121-RA | No alias | (at4g13650 : 672.0) Pentatricopeptide repeat (PPR)... | 0.03 | Orthogroups_2024-Update | |
PSME_00057187-RA | No alias | (at1g11290 : 659.0) Pentatricopeptide Repeat Protein... | 0.03 | Orthogroups_2024-Update | |
Potri.002G155100 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Potri.004G124400 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
Seita.9G057100.1 | No alias | RNA editing factor *(OTP85) | 0.04 | Orthogroups_2024-Update | |
Sobic.006G153300.2 | No alias | RNA editing factor *(MEF21) | 0.02 | Orthogroups_2024-Update | |
Solyc01g095690 | No alias | Pentatricopeptide repeat-containing protein, putative... | 0.03 | Orthogroups_2024-Update | |
Solyc12g096510 | No alias | Pentatricopeptide repeat-containing protein (AHRD V3.3... | 0.04 | Orthogroups_2024-Update | |
Sopen01g039430 | No alias | PPR repeat family | 0.02 | Orthogroups_2024-Update | |
Sopen10g006390 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0008270 | zinc ion binding | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000295 | adenine nucleotide transmembrane transporter activity | IEP | Predicted GO |
MF | GO:0003676 | nucleic acid binding | IEP | Predicted GO |
MF | GO:0003677 | DNA binding | IEP | Predicted GO |
MF | GO:0003887 | DNA-directed DNA polymerase activity | IEP | Predicted GO |
MF | GO:0003951 | NAD+ kinase activity | IEP | Predicted GO |
MF | GO:0004325 | ferrochelatase activity | IEP | Predicted GO |
MF | GO:0004527 | exonuclease activity | IEP | Predicted GO |
MF | GO:0005085 | guanyl-nucleotide exchange factor activity | IEP | Predicted GO |
MF | GO:0005088 | Ras guanyl-nucleotide exchange factor activity | IEP | Predicted GO |
MF | GO:0005089 | Rho guanyl-nucleotide exchange factor activity | IEP | Predicted GO |
MF | GO:0005346 | purine ribonucleotide transmembrane transporter activity | IEP | Predicted GO |
MF | GO:0005347 | ATP transmembrane transporter activity | IEP | Predicted GO |
MF | GO:0005471 | ATP:ADP antiporter activity | IEP | Predicted GO |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Predicted GO |
BP | GO:0006739 | NADP metabolic process | IEP | Predicted GO |
BP | GO:0006741 | NADP biosynthetic process | IEP | Predicted GO |
BP | GO:0006778 | porphyrin-containing compound metabolic process | IEP | Predicted GO |
BP | GO:0006779 | porphyrin-containing compound biosynthetic process | IEP | Predicted GO |
BP | GO:0006783 | heme biosynthetic process | IEP | Predicted GO |
BP | GO:0006862 | nucleotide transport | IEP | Predicted GO |
MF | GO:0008408 | 3'-5' exonuclease activity | IEP | Predicted GO |
MF | GO:0008514 | organic anion transmembrane transporter activity | IEP | Predicted GO |
BP | GO:0009690 | cytokinin metabolic process | IEP | Predicted GO |
BP | GO:0010817 | regulation of hormone levels | IEP | Predicted GO |
MF | GO:0015215 | nucleotide transmembrane transporter activity | IEP | Predicted GO |
MF | GO:0015216 | purine nucleotide transmembrane transporter activity | IEP | Predicted GO |
MF | GO:0015217 | ADP transmembrane transporter activity | IEP | Predicted GO |
MF | GO:0015301 | anion:anion antiporter activity | IEP | Predicted GO |
MF | GO:0015605 | organophosphate ester transmembrane transporter activity | IEP | Predicted GO |
BP | GO:0015748 | organophosphate ester transport | IEP | Predicted GO |
BP | GO:0015931 | nucleobase-containing compound transport | IEP | Predicted GO |
MF | GO:0015932 | nucleobase-containing compound transmembrane transporter activity | IEP | Predicted GO |
MF | GO:0017016 | Ras GTPase binding | IEP | Predicted GO |
MF | GO:0017048 | Rho GTPase binding | IEP | Predicted GO |
MF | GO:0019139 | cytokinin dehydrogenase activity | IEP | Predicted GO |
MF | GO:0019239 | deaminase activity | IEP | Predicted GO |
MF | GO:0031267 | small GTPase binding | IEP | Predicted GO |
BP | GO:0033013 | tetrapyrrole metabolic process | IEP | Predicted GO |
BP | GO:0033014 | tetrapyrrole biosynthetic process | IEP | Predicted GO |
MF | GO:0034061 | DNA polymerase activity | IEP | Predicted GO |
BP | GO:0034754 | cellular hormone metabolic process | IEP | Predicted GO |
BP | GO:0042168 | heme metabolic process | IEP | Predicted GO |
BP | GO:0042440 | pigment metabolic process | IEP | Predicted GO |
BP | GO:0042445 | hormone metabolic process | IEP | Predicted GO |
BP | GO:0046148 | pigment biosynthetic process | IEP | Predicted GO |
BP | GO:0046483 | heterocycle metabolic process | IEP | Predicted GO |
MF | GO:0051020 | GTPase binding | IEP | Predicted GO |
BP | GO:0051186 | cofactor metabolic process | IEP | Predicted GO |
BP | GO:0051188 | cofactor biosynthetic process | IEP | Predicted GO |
BP | GO:0065007 | biological regulation | IEP | Predicted GO |
BP | GO:0065008 | regulation of biological quality | IEP | Predicted GO |
MF | GO:0099516 | ion antiporter activity | IEP | Predicted GO |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Predicted GO |
MF | GO:1901505 | carbohydrate derivative transmembrane transporter activity | IEP | Predicted GO |
No external refs found! |