1. Home
  2. Species
  3. Picea abies
  4. Sequence
  5. MA_210232g0010

MA_210232g0010


Description : (at5g50700 : 200.0) Encodes a hydroxysteroid dehydrogenase HSD1. Two copies of HSD1 (At5g50600 and At5g50700) exist in the Arabidopsis genome as a result of an exact 33-kb duplication on chromosome 5 encompassing seven genes. There are five homologs of HSD1 in Arabidopsis (HSD2-At3g47350, HSD3-At3g47360, HSD4-At5g50590, HSD4-At5g50690 and HSD6-At5g50770; HSD4 has two copies due to the same gene duplication event occurred to HSD1) (Plant Cell Physiology 50:1463). At5g50690 is also named as HSD7 (Plant Physiology 145:87). HSD1 is identified from the proteome of oil bodies from mature seeds. Transcription of HSD1 is specifically and highly induced in oil-accumulating tissues of mature seeds; transcript disappears during germination.; hydroxysteroid dehydrogenase 1 (HSD1); FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: seed; CONTAINS InterPro DOMAIN/s: Short-chain dehydrogenase/reductase, conserved site (InterPro:IPR020904), NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: hydroxysteroid dehydrogenase 1 (TAIR:AT5G50600.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q949m3|fabg3_brana : 102.0) 3-oxoacyl-[acyl-carrier-protein] reductase 3, chloroplast precursor (EC 1.1.1.100) (3-ketoacyl-acyl carrier protein reductase 3) - Brassica napus (Rape) & (reliability: 400.0) & (original description: no original description)


Gene families : OG_42_0000632 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000632_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_210232g0010
Cluster HCCA clusters: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
Bradi5g08297 No alias hydroxysteroid dehydrogenase 1 0.02 Orthogroups_2024-Update
Brara.F01960.1 No alias STEROLEOSIN-type dehydrogenase & EC_1.1 oxidoreductase... 0.02 Orthogroups_2024-Update
MA_86419g0010 No alias (at4g10020 : 259.0) Encodes a putative hydroxysteroid... 0.04 Orthogroups_2024-Update
Potri.016G048900 No alias hydroxysteroid dehydrogenase 4 0.02 Orthogroups_2024-Update
Pp1s23_315V6 No alias 11-beta-hydroxysteroid dehydrogenase-like protein 0.02 Orthogroups_2024-Update
Seita.8G125700.1 No alias STEROLEOSIN-type dehydrogenase & EC_1.1 oxidoreductase... 0.03 Orthogroups_2024-Update
Sobic.001G181600.1 No alias STEROLEOSIN-type dehydrogenase & EC_1.1 oxidoreductase... 0.03 Orthogroups_2024-Update
Sobic.005G121500.1 No alias STEROLEOSIN-type dehydrogenase & EC_1.1 oxidoreductase... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Predicted GO
MF GO:0016597 amino acid binding IEP Predicted GO
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP Predicted GO
MF GO:0031406 carboxylic acid binding IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
MF GO:0043177 organic acid binding IEP Predicted GO
CC GO:0044427 chromosomal part IEP Predicted GO
CC GO:0044815 DNA packaging complex IEP Predicted GO
BP GO:0046834 lipid phosphorylation IEP Predicted GO
BP GO:0046854 phosphatidylinositol phosphorylation IEP Predicted GO
InterPro domains Description Start Stop
IPR002347 SDR_fam 51 240
No external refs found!