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  5. MA_21580g0010

MA_21580g0010


Description : (at3g49730 : 524.0) Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G65820.1); Has 44976 Blast hits to 14279 proteins in 285 species: Archae - 4; Bacteria - 30; Metazoa - 692; Fungi - 575; Plants - 42339; Viruses - 0; Other Eukaryotes - 1336 (source: NCBI BLink). & (q76c99|rf1_orysa : 189.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1048.0) & (original description: no original description)


Gene families : OG_42_0009201 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0009201_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_21580g0010
Cluster HCCA clusters: Cluster_55

Target Alias Description ECC score Gene Family Method Actions
GRMZM2G092198 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004721 phosphoprotein phosphatase activity IEP Predicted GO
BP GO:0007165 signal transduction IEP Predicted GO
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
BP GO:0016311 dephosphorylation IEP Predicted GO
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
MF GO:0043531 ADP binding IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO
BP GO:0065007 biological regulation IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 357 413
IPR002885 Pentatricopeptide_repeat 481 507
IPR002885 Pentatricopeptide_repeat 442 471
IPR002885 Pentatricopeptide_repeat 514 543
IPR002885 Pentatricopeptide_repeat 163 208
IPR002885 Pentatricopeptide_repeat 298 347
IPR002885 Pentatricopeptide_repeat 260 292
IPR002885 Pentatricopeptide_repeat 227 256
No external refs found!