1. Home
  2. Species
  3. Picea abies
  4. Sequence
  5. MA_218345g0010

MA_218345g0010


Description : (at2g38970 : 115.0) Zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: Zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G54780.1); Has 4418 Blast hits to 4397 proteins in 764 species: Archae - 94; Bacteria - 1613; Metazoa - 1251; Fungi - 170; Plants - 535; Viruses - 5; Other Eukaryotes - 750 (source: NCBI BLink). & (reliability: 230.0) & (original description: no original description)


Gene families : OG_42_0000384 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000384_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_218345g0010
Cluster HCCA clusters: Cluster_219

Target Alias Description ECC score Gene Family Method Actions
At2g22680 No alias E3 ubiquitin-protein ligase WAVH1... 0.03 Orthogroups_2024-Update
Cre09.g395843 No alias Zinc finger (C3HC4-type RING finger) family protein 0.01 Orthogroups_2024-Update
Glyma.08G273400 No alias Zinc finger (C3HC4-type RING finger) family protein 0.05 Orthogroups_2024-Update
Glyma.13G324534 No alias Zinc finger (C3HC4-type RING finger) family protein 0.03 Orthogroups_2024-Update
HORVU4Hr1G084330.1 No alias Unknown function 0.04 Orthogroups_2024-Update
HORVU5Hr1G076190.1 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os02g56280 No alias zinc finger family protein, putative, expressed 0.03 Orthogroups_2024-Update
PSME_00047144-RA No alias (at2g38970 : 509.0) Zinc finger (C3HC4-type RING finger)... 0.03 Orthogroups_2024-Update
PSME_00055670-RA No alias (at2g38970 : 266.0) Zinc finger (C3HC4-type RING finger)... 0.04 Orthogroups_2024-Update
Potri.003G148400 No alias Zinc finger (C3HC4-type RING finger) family protein 0.03 Orthogroups_2024-Update
Seita.9G230200.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.9G544100.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Sobic.001G226900.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Sobic.001G508466.1 No alias Unknown function 0.06 Orthogroups_2024-Update
Sopen02g018610 No alias von Willebrand factor type A domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0006777 Mo-molybdopterin cofactor biosynthetic process IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
BP GO:0019720 Mo-molybdopterin cofactor metabolic process IEP Predicted GO
BP GO:0043545 molybdopterin cofactor metabolic process IEP Predicted GO
BP GO:0051189 prosthetic group metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 118 147
No external refs found!