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  5. MA_219531g0010

MA_219531g0010


Description : (at1g67340 : 269.0) HCP-like superfamily protein with MYND-type zinc finger; FUNCTIONS IN: binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, MYND-type (InterPro:IPR002893), Tetratricopeptide-like helical (InterPro:IPR011990), Sel1-like (InterPro:IPR006597); BEST Arabidopsis thaliana protein match is: HCP-like superfamily protein with MYND-type zinc finger (TAIR:AT5G50450.1); Has 623 Blast hits to 604 proteins in 167 species: Archae - 0; Bacteria - 161; Metazoa - 77; Fungi - 145; Plants - 151; Viruses - 2; Other Eukaryotes - 87 (source: NCBI BLink). & (reliability: 538.0) & (original description: no original description)


Gene families : OG_42_0000933 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000933_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_219531g0010
Cluster HCCA clusters: Cluster_249

Target Alias Description ECC score Gene Family Method Actions
Bradi2g59090 No alias HCP-like superfamily protein with MYND-type zinc finger 0.03 Orthogroups_2024-Update
Cre02.g095143 No alias ubiquitin-specific protease 17 0.01 Orthogroups_2024-Update
Cre12.g486000 No alias Function unknown 0.02 Orthogroups_2024-Update
HORVU2Hr1G069440.2 No alias Unknown function 0.02 Orthogroups_2024-Update
Mp1g18040.1 No alias F-box protein At1g67340 OS=Arabidopsis thaliana... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Predicted GO
BP GO:0008037 cell recognition IEP Predicted GO
BP GO:0022414 reproductive process IEP Predicted GO
BP GO:0048544 recognition of pollen IEP Predicted GO
MF GO:0051536 iron-sulfur cluster binding IEP Predicted GO
MF GO:0051540 metal cluster binding IEP Predicted GO
InterPro domains Description Start Stop
IPR002893 Znf_MYND 380 421
IPR001810 F-box_dom 73 114
No external refs found!