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Description : (at2g13600 : 483.0) Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G22070.1); Has 46660 Blast hits to 13875 proteins in 226 species: Archae - 0; Bacteria - 4; Metazoa - 74; Fungi - 58; Plants - 45878; Viruses - 0; Other Eukaryotes - 646 (source: NCBI BLink). & (q76c99|rf1_orysa : 143.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 966.0) & (original description: no original description)
Gene families : OG_42_0022285 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Picea release: MA_223158g0010 | |
| Cluster | HCCA clusters: Cluster_167 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| PSME_00038295-RA | No alias | (at4g13650 : 524.0) Pentatricopeptide repeat (PPR)... | 0.04 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005488 | binding | IEP | Predicted GO |
| MF | GO:0008270 | zinc ion binding | IEP | Predicted GO |
| MF | GO:0043167 | ion binding | IEP | Predicted GO |
| MF | GO:0043169 | cation binding | IEP | Predicted GO |
| MF | GO:0046872 | metal ion binding | IEP | Predicted GO |
| MF | GO:0046914 | transition metal ion binding | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 97 | 144 |
| IPR002885 | Pentatricopeptide_repeat | 648 | 696 |
| IPR002885 | Pentatricopeptide_repeat | 384 | 432 |
| IPR002885 | Pentatricopeptide_repeat | 258 | 305 |
| IPR002885 | Pentatricopeptide_repeat | 547 | 594 |
| IPR002885 | Pentatricopeptide_repeat | 170 | 197 |
| IPR002885 | Pentatricopeptide_repeat | 198 | 227 |
| IPR002885 | Pentatricopeptide_repeat | 487 | 514 |
| IPR002885 | Pentatricopeptide_repeat | 229 | 257 |
| IPR002885 | Pentatricopeptide_repeat | 356 | 383 |
| IPR002885 | Pentatricopeptide_repeat | 459 | 485 |
| IPR002885 | Pentatricopeptide_repeat | 518 | 546 |
| IPR002885 | Pentatricopeptide_repeat | 722 | 746 |
| No external refs found! |