Description : (at4g13650 : 756.0) Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G16480.1); Has 61118 Blast hits to 14026 proteins in 284 species: Archae - 2; Bacteria - 18; Metazoa - 154; Fungi - 167; Plants - 59907; Viruses - 0; Other Eukaryotes - 870 (source: NCBI BLink). & (q76c99|rf1_orysa : 139.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1512.0) & (original description: no original description)
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Picea release: MA_230261g0010 | |
Cluster | HCCA clusters: Cluster_84 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
At1g06140 | No alias | Pentatricopeptide repeat-containing protein At1g06140,... | 0.03 | Orthogroups_2024-Update | |
At1g77170 | No alias | Pentatricopeptide repeat-containing protein At1g77170,... | 0.03 | Orthogroups_2024-Update | |
At3g49170 | No alias | Pentatricopeptide repeat-containing protein At3g49170,... | 0.03 | Orthogroups_2024-Update | |
At5g40410 | No alias | Pentatricopeptide repeat-containing protein At5g40410,... | 0.03 | Orthogroups_2024-Update | |
At5g52850 | No alias | Pentatricopeptide repeat-containing protein At5g52850,... | 0.03 | Orthogroups_2024-Update | |
Brara.H00716.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
Glyma.02G043900 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
Glyma.02G227300 | No alias | Pentatricopeptide repeat (PPR-like) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.08G213800 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.04 | Orthogroups_2024-Update | |
Glyma.09G160300 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.09G232200 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.15G093800 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.16G035600 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
MA_10157572g0010 | No alias | (at4g18750 : 548.0) Encodes a pentatricopeptide (PPR)... | 0.03 | Orthogroups_2024-Update | |
MA_10429069g0010 | No alias | (at4g18750 : 575.0) Encodes a pentatricopeptide (PPR)... | 0.04 | Orthogroups_2024-Update | |
MA_110266g0010 | No alias | (at1g11290 : 558.0) Pentatricopeptide Repeat Protein... | 0.04 | Orthogroups_2024-Update | |
MA_118590g0010 | No alias | (at3g24000 : 399.0) Tetratricopeptide repeat (TPR)-like... | 0.04 | Orthogroups_2024-Update | |
MA_42352g0010 | No alias | (at2g13600 : 487.0) Pentatricopeptide repeat (PPR)... | 0.08 | Orthogroups_2024-Update | |
MA_68707g0010 | No alias | (at3g24000 : 546.0) Tetratricopeptide repeat (TPR)-like... | 0.06 | Orthogroups_2024-Update | |
PSME_00011574-RA | No alias | (at1g16480 : 646.0) Tetratricopeptide repeat (TPR)-like... | 0.03 | Orthogroups_2024-Update | |
PSME_00022325-RA | No alias | (at3g09040 : 700.0) Pentatricopeptide repeat (PPR)... | 0.03 | Orthogroups_2024-Update | |
PSME_00025402-RA | No alias | (at3g02010 : 629.0) Pentatricopeptide repeat (PPR)... | 0.03 | Orthogroups_2024-Update | |
PSME_00030185-RA | No alias | (at3g57430 : 680.0) Encodes a chloroplast RNA editing... | 0.03 | Orthogroups_2024-Update | |
PSME_00038079-RA | No alias | (at3g02010 : 593.0) Pentatricopeptide repeat (PPR)... | 0.03 | Orthogroups_2024-Update | |
PSME_00038145-RA | No alias | (at5g52630 : 598.0) Encodes a member of the DYW... | 0.04 | Orthogroups_2024-Update | |
PSME_00056218-RA | No alias | (at1g11290 : 607.0) Pentatricopeptide Repeat Protein... | 0.03 | Orthogroups_2024-Update | |
PSME_00057046-RA | No alias | (at4g18750 : 592.0) Encodes a pentatricopeptide (PPR)... | 0.04 | Orthogroups_2024-Update | |
Seita.9G514800.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Solyc11g064750 | No alias | Pentatricopeptide repeat-containing family protein (AHRD... | 0.02 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0008270 | zinc ion binding | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003723 | RNA binding | IEP | Predicted GO |
MF | GO:0004652 | polynucleotide adenylyltransferase activity | IEP | Predicted GO |
MF | GO:0005515 | protein binding | IEP | Predicted GO |
BP | GO:0007165 | signal transduction | IEP | Predicted GO |
BP | GO:0016070 | RNA metabolic process | IEP | Predicted GO |
MF | GO:0043531 | ADP binding | IEP | Predicted GO |
BP | GO:0043631 | RNA polyadenylation | IEP | Predicted GO |
MF | GO:0070566 | adenylyltransferase activity | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002885 | Pentatricopeptide_repeat | 627 | 648 |
IPR002885 | Pentatricopeptide_repeat | 599 | 624 |
IPR002885 | Pentatricopeptide_repeat | 195 | 220 |
IPR002885 | Pentatricopeptide_repeat | 527 | 555 |
IPR002885 | Pentatricopeptide_repeat | 800 | 824 |
IPR002885 | Pentatricopeptide_repeat | 223 | 253 |
IPR032867 | DYW_dom | 899 | 1019 |
IPR002885 | Pentatricopeptide_repeat | 85 | 117 |
IPR002885 | Pentatricopeptide_repeat | 322 | 369 |
IPR002885 | Pentatricopeptide_repeat | 726 | 773 |
IPR002885 | Pentatricopeptide_repeat | 422 | 470 |
IPR002885 | Pentatricopeptide_repeat | 120 | 167 |
No external refs found! |