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  5. MA_230579g0020

MA_230579g0020


Description : (q76fs3|tbb6_orysa : 573.0) Tubulin beta-6 chain (Beta-6 tubulin) - Oryza sativa (Rice) & (at5g12250 : 568.0) Encodes a beta-tubulin. Expression of TUB6 has been shown to decrease in response to cold treatment.; beta-6 tubulin (TUB6); FUNCTIONS IN: structural constituent of cytoskeleton; INVOLVED IN: microtubule-based process, response to salt stress, response to cold; LOCATED IN: microtubule cytoskeleton, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Beta tubulin (InterPro:IPR002453), Tubulin (InterPro:IPR000217), Tubulin/FtsZ, GTPase domain (InterPro:IPR003008), Tubulin/FtsZ, N-terminal (InterPro:IPR019746), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Beta tubulin, autoregulation binding site (InterPro:IPR013838), Tubulin, conserved site (InterPro:IPR017975), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: tubulin beta chain 3 (TAIR:AT5G62700.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 1136.0) & (original description: no original description)


Gene families : OG_42_0000212 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000212_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_230579g0020
Cluster HCCA clusters: Cluster_243

Target Alias Description ECC score Gene Family Method Actions
170592 No alias tubulin beta 8 0.03 Orthogroups_2024-Update
A4A49_07023 No alias tubulin beta-2 chain 0.03 Orthogroups_2024-Update
A4A49_21669 No alias tubulin beta-2 chain 0.05 Orthogroups_2024-Update
A4A49_57434 No alias tubulin beta-8 chain 0.02 Orthogroups_2024-Update
A4A49_64347 No alias tubulin beta-2 chain 0.04 Orthogroups_2024-Update
Bradi1g13090 No alias tubulin beta chain 4 0.04 Orthogroups_2024-Update
Bradi1g32430 No alias tubulin beta chain 2 0.02 Orthogroups_2024-Update
Bradi2g10970 No alias beta-6 tubulin 0.03 Orthogroups_2024-Update
Brara.A02439.1 No alias beta-Tubulin component *(TUB) of alpha-beta-Tubulin heterodimer 0.03 Orthogroups_2024-Update
Brara.F01786.1 No alias beta-Tubulin component *(TUB) of alpha-beta-Tubulin heterodimer 0.05 Orthogroups_2024-Update
Brara.I01840.1 No alias beta-Tubulin component *(TUB) of alpha-beta-Tubulin heterodimer 0.04 Orthogroups_2024-Update
Brara.K01811.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Cre12.g542250 No alias tubulin beta chain 2 0.02 Orthogroups_2024-Update
Cre12.g549550 No alias tubulin beta chain 2 0.02 Orthogroups_2024-Update
GRMZM2G108766 No alias tubulin beta 8 0.04 Orthogroups_2024-Update
Glyma.03G124400 No alias beta-6 tubulin 0.03 Orthogroups_2024-Update
Glyma.04G023900 No alias tubulin beta-1 chain 0.03 Orthogroups_2024-Update
Glyma.05G207500 No alias beta-6 tubulin 0.03 Orthogroups_2024-Update
Glyma.14G219300 No alias tubulin beta-1 chain 0.04 Orthogroups_2024-Update
Glyma.20G159200 No alias tubulin beta 8 0.03 Orthogroups_2024-Update
LOC_Os01g59150 No alias tubulin/FtsZ domain containing protein, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os03g56810 No alias tubulin/FtsZ domain containing protein, putative, expressed 0.03 Orthogroups_2024-Update
Mp1g20730.1 No alias component beta-Tubulin of alpha-beta-Tubulin heterodimer 0.02 Orthogroups_2024-Update
Mp2g16780.1 No alias component beta-Tubulin of alpha-beta-Tubulin heterodimer 0.02 Orthogroups_2024-Update
Potri.001G106100 No alias tubulin beta 8 0.03 Orthogroups_2024-Update
Potri.006G035400 No alias beta-6 tubulin 0.03 Orthogroups_2024-Update
Potri.009G040200 No alias tubulin beta 8 0.05 Orthogroups_2024-Update
Potri.009G067100 No alias beta-6 tubulin 0.04 Orthogroups_2024-Update
Pp1s218_7V6 No alias tubulin beta 0.02 Orthogroups_2024-Update
Pp1s252_101V6 No alias tubulin beta 0.02 Orthogroups_2024-Update
Pp1s252_90V6 No alias tubulin beta 0.03 Orthogroups_2024-Update
Pp1s93_136V6 No alias tubulin beta 0.02 Orthogroups_2024-Update
Sobic.001G540900.1 No alias beta-Tubulin component *(TUB) of alpha-beta-Tubulin heterodimer 0.02 Orthogroups_2024-Update
Sopen10g031450 No alias Tubulin/FtsZ family, GTPase domain 0.04 Orthogroups_2024-Update
evm.model.tig00001067.6 No alias (p04690|tbb_chlre : 752.0) Tubulin beta-1/beta-2 chain -... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003887 DNA-directed DNA polymerase activity IEP Predicted GO
MF GO:0003993 acid phosphatase activity IEP Predicted GO
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Predicted GO
MF GO:0004556 alpha-amylase activity IEP Predicted GO
MF GO:0004857 enzyme inhibitor activity IEP Predicted GO
MF GO:0005509 calcium ion binding IEP Predicted GO
BP GO:0005975 carbohydrate metabolic process IEP Predicted GO
BP GO:0006260 DNA replication IEP Predicted GO
MF GO:0016160 amylase activity IEP Predicted GO
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Predicted GO
MF GO:0016791 phosphatase activity IEP Predicted GO
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Predicted GO
MF GO:0030234 enzyme regulator activity IEP Predicted GO
MF GO:0030599 pectinesterase activity IEP Predicted GO
MF GO:0034061 DNA polymerase activity IEP Predicted GO
BP GO:0042545 cell wall modification IEP Predicted GO
MF GO:0042578 phosphoric ester hydrolase activity IEP Predicted GO
BP GO:0045229 external encapsulating structure organization IEP Predicted GO
MF GO:0045735 nutrient reservoir activity IEP Predicted GO
MF GO:0052689 carboxylic ester hydrolase activity IEP Predicted GO
BP GO:0071554 cell wall organization or biogenesis IEP Predicted GO
BP GO:0071555 cell wall organization IEP Predicted GO
MF GO:0098772 molecular function regulator IEP Predicted GO
InterPro domains Description Start Stop
IPR003008 Tubulin_FtsZ_GTPase 3 211
IPR018316 Tubulin/FtsZ_2-layer-sand-dom 261 295
No external refs found!