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  5. MA_236484g0010

MA_236484g0010


Description : (at4g02750 : 505.0) Tetratricopeptide repeat (TPR)-like superfamily protein; LOCATED IN: mitochondrion; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G09410.1); Has 56089 Blast hits to 14902 proteins in 275 species: Archae - 0; Bacteria - 15; Metazoa - 173; Fungi - 123; Plants - 55165; Viruses - 0; Other Eukaryotes - 613 (source: NCBI BLink). & (q76c99|rf1_orysa : 157.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1010.0) & (original description: no original description)


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_236484g0010
Cluster HCCA clusters: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
A4A49_17130 No alias pentatricopeptide repeat-containing protein dot4, chloroplastic 0.02 Orthogroups_2024-Update
Bradi4g19150 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Bradi4g22520 No alias mitochondrial editing factor 22 0.03 Orthogroups_2024-Update
Glyma.16G026000 No alias pentatricopeptide (PPR) repeat-containing protein 0.02 Orthogroups_2024-Update
HORVU2Hr1G035330.2 No alias Unknown function 0.04 Orthogroups_2024-Update
HORVU2Hr1G084530.3 No alias RNA editing factor *(SLO4) 0.03 Orthogroups_2024-Update
PSME_00011574-RA No alias (at1g16480 : 646.0) Tetratricopeptide repeat (TPR)-like... 0.04 Orthogroups_2024-Update
PSME_00017626-RA No alias (at4g13650 : 693.0) Pentatricopeptide repeat (PPR)... 0.07 Orthogroups_2024-Update
PSME_00025365-RA No alias (at3g49170 : 602.0) embryo defective 2261 (EMB2261);... 0.04 Orthogroups_2024-Update
Sobic.001G444200.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.006G153300.2 No alias RNA editing factor *(MEF21) 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004611 phosphoenolpyruvate carboxykinase activity IEP Predicted GO
BP GO:0006099 tricarboxylic acid cycle IEP Predicted GO
BP GO:0006101 citrate metabolic process IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0008964 phosphoenolpyruvate carboxylase activity IEP Predicted GO
BP GO:0015977 carbon fixation IEP Predicted GO
MF GO:0016830 carbon-carbon lyase activity IEP Predicted GO
MF GO:0016831 carboxy-lyase activity IEP Predicted GO
BP GO:0016999 antibiotic metabolic process IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
BP GO:0072350 tricarboxylic acid metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 302 327
IPR002885 Pentatricopeptide_repeat 240 269
IPR002885 Pentatricopeptide_repeat 271 299
IPR002885 Pentatricopeptide_repeat 537 561
IPR002885 Pentatricopeptide_repeat 212 238
IPR002885 Pentatricopeptide_repeat 137 185
IPR002885 Pentatricopeptide_repeat 361 409
IPR002885 Pentatricopeptide_repeat 463 511
IPR002885 Pentatricopeptide_repeat 330 358
IPR002885 Pentatricopeptide_repeat 101 134
No external refs found!