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  5. Solyc10g054480

Solyc10g054480


Description : FAD-binding Berberine family protein, putative (AHRD V3.3 *** A0A061G791_THECC)


Gene families : OG_42_0000069 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000069_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc10g054480
Cluster HCCA clusters: Cluster_242

Target Alias Description ECC score Gene Family Method Actions
Glyma.05G125600 No alias FAD-binding Berberine family protein 0.03 Orthogroups_2024-Update
Potri.006G128900 No alias FAD-binding Berberine family protein 0.05 Orthogroups_2024-Update
evm.model.contig_3423.9 No alias (at1g26410 : 107.0) FAD-binding Berberine family... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0016491 oxidoreductase activity IEA InterProScan predictions
MF GO:0050660 flavin adenine dinucleotide binding IEA InterProScan predictions
BP GO:0055114 oxidation-reduction process IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004843 thiol-dependent ubiquitin-specific protease activity IEP Predicted GO
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Predicted GO
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Predicted GO
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Predicted GO
MF GO:0101005 ubiquitinyl hydrolase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR006094 Oxid_FAD_bind_N 43 179
No external refs found!