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  5. MA_245850g0010

MA_245850g0010


Description : (at4g23790 : 327.0) Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).; TRICHOME BIREFRINGENCE-LIKE 24 (TBL24); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: TRICHOME BIREFRINGENCE-LIKE 23 (TAIR:AT4G11090.1); Has 1329 Blast hits to 1312 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 1325; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). & (reliability: 654.0) & (original description: no original description)


Gene families : OG_42_0000195 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000195_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_245850g0010
Cluster HCCA clusters: Cluster_256

Target Alias Description ECC score Gene Family Method Actions
A4A49_16870 No alias protein trichome birefringence-like 19 0.04 Orthogroups_2024-Update
A4A49_21740 No alias protein trichome birefringence-like 19 0.02 Orthogroups_2024-Update
At3g28150 No alias Protein ALTERED XYLOGLUCAN 4-like... 0.02 Orthogroups_2024-Update
Bradi2g45350 No alias TRICHOME BIREFRINGENCE-LIKE 21 0.02 Orthogroups_2024-Update
Bradi3g56217 No alias TRICHOME BIREFRINGENCE-LIKE 21 0.02 Orthogroups_2024-Update
Bradi4g29271 No alias TRICHOME BIREFRINGENCE-LIKE 27 0.03 Orthogroups_2024-Update
GRMZM2G004183 No alias TRICHOME BIREFRINGENCE-LIKE 19 0.02 Orthogroups_2024-Update
GRMZM2G305439 No alias TRICHOME BIREFRINGENCE-LIKE 21 0.02 Orthogroups_2024-Update
GRMZM6G880411 No alias TRICHOME BIREFRINGENCE-LIKE 21 0.04 Orthogroups_2024-Update
Glyma.13G230100 No alias TRICHOME BIREFRINGENCE-LIKE 21 0.05 Orthogroups_2024-Update
Glyma.16G026600 No alias TRICHOME BIREFRINGENCE-LIKE 25 0.03 Orthogroups_2024-Update
HORVU7Hr1G042930.1 No alias Unknown function 0.04 Orthogroups_2024-Update
LOC_Os02g49660 No alias expressed protein 0.03 Orthogroups_2024-Update
LOC_Os05g12380 No alias expressed protein 0.03 Orthogroups_2024-Update
Potri.004G105700 No alias TRICHOME BIREFRINGENCE-LIKE 19 0.03 Orthogroups_2024-Update
Seita.2G191400.1 No alias xyloglucan O-acetyltransferase *(AXY4) 0.02 Orthogroups_2024-Update
Sobic.005G229100.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sopen02g034400 No alias GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000723 telomere maintenance IEP Predicted GO
MF GO:0003678 DNA helicase activity IEP Predicted GO
MF GO:0004367 glycerol-3-phosphate dehydrogenase [NAD+] activity IEP Predicted GO
MF GO:0004386 helicase activity IEP Predicted GO
BP GO:0006072 glycerol-3-phosphate metabolic process IEP Predicted GO
BP GO:0016043 cellular component organization IEP Predicted GO
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Predicted GO
MF GO:0030246 carbohydrate binding IEP Predicted GO
BP GO:0032200 telomere organization IEP Predicted GO
BP GO:0046168 glycerol-3-phosphate catabolic process IEP Predicted GO
BP GO:0052646 alditol phosphate metabolic process IEP Predicted GO
BP GO:0060249 anatomical structure homeostasis IEP Predicted GO
BP GO:0071840 cellular component organization or biogenesis IEP Predicted GO
InterPro domains Description Start Stop
IPR026057 PC-Esterase 140 431
IPR025846 PMR5_N_dom 89 137
No external refs found!