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  5. MA_246350g0010

MA_246350g0010


Description : (at1g13260 : 168.0) Encodes an AP2/B3 domain transcription factor which is upregulated in response to low temperature. It contains a B3 DNA binding domain. It has circadian regulation and may function as a negative growth regulator.; related to ABI3/VP1 1 (RAV1); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Transcriptional factor B3 (InterPro:IPR003340), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ethylene response DNA binding factor 3 (TAIR:AT3G25730.1); Has 6277 Blast hits to 6015 proteins in 258 species: Archae - 0; Bacteria - 3; Metazoa - 0; Fungi - 0; Plants - 6251; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink). & (reliability: 336.0) & (original description: no original description)


Gene families : OG_42_0000305 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000305_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_246350g0010
Cluster HCCA clusters: Cluster_153

Target Alias Description ECC score Gene Family Method Actions
At1g01030 No alias NGA3 [Source:UniProtKB/TrEMBL;Acc:A0A178W3T3] 0.03 Orthogroups_2024-Update
At3g11580 No alias AP2/B3-like transcriptional factor family protein... 0.03 Orthogroups_2024-Update
At3g61970 No alias NGA2 [Source:UniProtKB/TrEMBL;Acc:A0A178V7R1] 0.03 Orthogroups_2024-Update
Brara.C00243.1 No alias RAV/NGATHA-type transcription factor 0.03 Orthogroups_2024-Update
Brara.I04281.1 No alias RAV/NGATHA-type transcription factor 0.03 Orthogroups_2024-Update
Brara.I05049.1 No alias RAV/NGATHA-type transcription factor & AP2-RAV-type... 0.05 Orthogroups_2024-Update
Brara.J02597.1 No alias RAV/NGATHA-type transcription factor 0.03 Orthogroups_2024-Update
Glyma.01G087500 No alias AP2/B3 transcription factor family protein 0.05 Orthogroups_2024-Update
Glyma.02G099500 No alias AP2/B3 transcription factor family protein 0.05 Orthogroups_2024-Update
Glyma.10G204400 No alias AP2/B3 transcription factor family protein 0.03 Orthogroups_2024-Update
HORVU1Hr1G082670.6 No alias RAV/NGATHA-type transcription factor & AP2-RAV-type... 0.03 Orthogroups_2024-Update
HORVU3Hr1G010100.2 No alias RAV/NGATHA-type transcription factor & AP2-RAV-type... 0.03 Orthogroups_2024-Update
HORVU3Hr1G064590.1 No alias RAV/NGATHA-type transcription factor 0.03 Orthogroups_2024-Update
HORVU5Hr1G040620.2 No alias RAV/NGATHA-type transcription factor 0.02 Orthogroups_2024-Update
MA_10428163g0010 No alias (at1g13260 : 267.0) Encodes an AP2/B3 domain... 0.03 Orthogroups_2024-Update
PSME_00048986-RA No alias (at1g25560 : 246.0) Encodes a member of the RAV... 0.03 Orthogroups_2024-Update
Potri.006G208100 No alias AP2/B3-like transcriptional factor family protein 0.04 Orthogroups_2024-Update
Potri.010G129200 No alias AP2/B3 transcription factor family protein 0.03 Orthogroups_2024-Update
Seita.1G273900.1 No alias RAV/NGATHA-type transcription factor 0.03 Orthogroups_2024-Update
Sopen04g002090 No alias B3 DNA binding domain 0.03 Orthogroups_2024-Update
Sopen08g004540 No alias B3 DNA binding domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
BP GO:0005975 carbohydrate metabolic process IEP Predicted GO
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Predicted GO
BP GO:0051276 chromosome organization IEP Predicted GO
InterPro domains Description Start Stop
IPR003340 B3_DNA-bd 244 308
No external refs found!