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Description : (at1g02840 : 125.0) SR1 is a plant homologue of the human general/alternative splicing factor SF2/ASF.; SR1; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; LOCATED IN: interchromatin granule, nuclear speck, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT4G02430.2); Has 35131 Blast hits to 21345 proteins in 1053 species: Archae - 12; Bacteria - 1352; Metazoa - 20795; Fungi - 3692; Plants - 3807; Viruses - 567; Other Eukaryotes - 4906 (source: NCBI BLink). & (reliability: 250.0) & (original description: no original description)
Gene families : OG_42_0117655 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Picea release: MA_259575g0010 | |
| Cluster | HCCA clusters: Cluster_268 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEA | InterProScan predictions |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003950 | NAD+ ADP-ribosyltransferase activity | IEP | Predicted GO |
| MF | GO:0008134 | transcription factor binding | IEP | Predicted GO |
| BP | GO:0009405 | pathogenesis | IEP | Predicted GO |
| MF | GO:0016763 | transferase activity, transferring pentosyl groups | IEP | Predicted GO |
| MF | GO:0017025 | TBP-class protein binding | IEP | Predicted GO |
| BP | GO:0044419 | interspecies interaction between organisms | IEP | Predicted GO |
| BP | GO:0051704 | multi-organism process | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR000504 | RRM_dom | 1 | 47 |
| No external refs found! |