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  5. MA_27147g0010

MA_27147g0010


Description : (at3g49170 : 606.0) embryo defective 2261 (EMB2261); INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G57430.1); Has 48732 Blast hits to 14187 proteins in 273 species: Archae - 0; Bacteria - 16; Metazoa - 205; Fungi - 147; Plants - 47588; Viruses - 0; Other Eukaryotes - 776 (source: NCBI BLink). & (q76c99|rf1_orysa : 123.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1212.0) & (original description: no original description)


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_27147g0010
Cluster HCCA clusters: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
82255 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
A4A49_18851 No alias pentatricopeptide repeat-containing protein 0.02 Orthogroups_2024-Update
GRMZM2G399433 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
GRMZM2G481373 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.02G227300 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.09G168800 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Glyma.15G193700 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
HORVU2Hr1G028520.2 No alias Unknown function 0.04 Orthogroups_2024-Update
LOC_Os01g60250 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os07g09370 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
PSME_00031504-RA No alias (at3g23330 : 207.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
PSME_00044871-RA No alias (at2g39620 : 426.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
PSME_00056424-RA No alias (at2g22070 : 461.0) pentatricopeptide (PPR)... 0.05 Orthogroups_2024-Update
PSME_00057248-RA No alias (at1g11290 : 733.0) Pentatricopeptide Repeat Protein... 0.04 Orthogroups_2024-Update
Potri.010G241100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Potri.013G058900 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Seita.1G191400.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.2G177900.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.3G126600.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.5G242100.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.001G069300.2 No alias RNA editing factor *(DEK36) 0.02 Orthogroups_2024-Update
Sobic.002G065200.1 No alias RNA editing factor *(CRR28) 0.03 Orthogroups_2024-Update
Sobic.002G358900.3 No alias RNA editing factor *(OTP90) 0.02 Orthogroups_2024-Update
Sobic.004G053100.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.004G199400.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.009G136200.1 No alias RNA editing factor *(MEF32) 0.02 Orthogroups_2024-Update
Solyc01g006920 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.02 Orthogroups_2024-Update
Solyc01g081290 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.02 Orthogroups_2024-Update
Solyc01g081560 No alias LOW QUALITY:Pentatricopeptide repeat-containing protein... 0.02 Orthogroups_2024-Update
Solyc01g090510 No alias Pentatricopeptide repeat-containing protein, putative... 0.02 Orthogroups_2024-Update
Solyc01g094850 No alias Pentatricopeptide repeat superfamily protein, putative... 0.03 Orthogroups_2024-Update
Solyc01g112200 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.02 Orthogroups_2024-Update
Solyc03g097850 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.02 Orthogroups_2024-Update
Solyc04g064750 No alias Pentatricopeptide repeat superfamily protein (AHRD V3.3... 0.02 Orthogroups_2024-Update
Solyc05g013200 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.02 Orthogroups_2024-Update
Solyc06g084580 No alias Pentatricopeptide repeat-containing protein family (AHRD... 0.02 Orthogroups_2024-Update
Solyc07g055310 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.02 Orthogroups_2024-Update
Solyc09g009950 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc11g011860 No alias Pentatricopeptide repeat-containing protein family (AHRD... 0.02 Orthogroups_2024-Update
Solyc11g071370 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.02 Orthogroups_2024-Update
Solyc12g042400 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.02 Orthogroups_2024-Update
Sopen01g039430 No alias PPR repeat family 0.03 Orthogroups_2024-Update
Sopen01g041720 No alias PPR repeat family 0.02 Orthogroups_2024-Update
Sopen08g024790 No alias PPR repeat 0.02 Orthogroups_2024-Update
Sopen10g006390 No alias PPR repeat family 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Predicted GO
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Predicted GO
BP GO:0006629 lipid metabolic process IEP Predicted GO
BP GO:0006720 isoprenoid metabolic process IEP Predicted GO
BP GO:0008299 isoprenoid biosynthetic process IEP Predicted GO
MF GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water IEP Predicted GO
MF GO:0016759 cellulose synthase activity IEP Predicted GO
MF GO:0016760 cellulose synthase (UDP-forming) activity IEP Predicted GO
MF GO:0016846 carbon-sulfur lyase activity IEP Predicted GO
MF GO:0016859 cis-trans isomerase activity IEP Predicted GO
BP GO:0018193 peptidyl-amino acid modification IEP Predicted GO
BP GO:0018208 peptidyl-proline modification IEP Predicted GO
BP GO:0030243 cellulose metabolic process IEP Predicted GO
BP GO:0030244 cellulose biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 260 309
IPR002885 Pentatricopeptide_repeat 462 509
IPR002885 Pentatricopeptide_repeat 361 408
IPR002885 Pentatricopeptide_repeat 162 192
IPR002885 Pentatricopeptide_repeat 132 160
IPR032867 DYW_dom 636 759
No external refs found!