Description : (at4g02750 : 763.0) Tetratricopeptide repeat (TPR)-like superfamily protein; LOCATED IN: mitochondrion; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G09410.1); Has 56089 Blast hits to 14902 proteins in 275 species: Archae - 0; Bacteria - 15; Metazoa - 173; Fungi - 123; Plants - 55165; Viruses - 0; Other Eukaryotes - 613 (source: NCBI BLink). & (q76c99|rf1_orysa : 148.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1526.0) & (original description: no original description)
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Picea release: MA_28607g0010 | |
Cluster | HCCA clusters: Cluster_7 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
45004 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Bradi1g36010 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Bradi1g49477 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.05 | Orthogroups_2024-Update | |
Bradi1g68870 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Brara.G01460.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
GRMZM2G462625 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
HORVU5Hr1G071640.4 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
LOC_Os07g05560 | No alias | expressed protein | 0.03 | Orthogroups_2024-Update | |
MA_10164206g0010 | No alias | (at1g11290 : 670.0) Pentatricopeptide Repeat Protein... | 0.04 | Orthogroups_2024-Update | |
MA_10429069g0010 | No alias | (at4g18750 : 575.0) Encodes a pentatricopeptide (PPR)... | 0.04 | Orthogroups_2024-Update | |
MA_10436764g0010 | No alias | (at4g13650 : 603.0) Pentatricopeptide repeat (PPR)... | 0.05 | Orthogroups_2024-Update | |
MA_210089g0010 | No alias | (at2g13600 : 442.0) Pentatricopeptide repeat (PPR)... | 0.04 | Orthogroups_2024-Update | |
MA_52613g0020 | No alias | (at4g33170 : 570.0) Tetratricopeptide repeat (TPR)-like... | 0.04 | Orthogroups_2024-Update | |
PSME_00006107-RA | No alias | (at1g11290 : 668.0) Pentatricopeptide Repeat Protein... | 0.03 | Orthogroups_2024-Update | |
PSME_00022325-RA | No alias | (at3g09040 : 700.0) Pentatricopeptide repeat (PPR)... | 0.03 | Orthogroups_2024-Update | |
PSME_00024326-RA | No alias | (at2g13600 : 445.0) Pentatricopeptide repeat (PPR)... | 0.04 | Orthogroups_2024-Update | |
PSME_00033106-RA | No alias | (at1g11290 : 489.0) Pentatricopeptide Repeat Protein... | 0.04 | Orthogroups_2024-Update | |
PSME_00038079-RA | No alias | (at3g02010 : 593.0) Pentatricopeptide repeat (PPR)... | 0.03 | Orthogroups_2024-Update | |
PSME_00051765-RA | No alias | (at3g03580 : 693.0) Tetratricopeptide repeat (TPR)-like... | 0.03 | Orthogroups_2024-Update | |
PSME_00056507-RA | No alias | (at1g16480 : 719.0) Tetratricopeptide repeat (TPR)-like... | 0.04 | Orthogroups_2024-Update | |
PSME_00057248-RA | No alias | (at1g11290 : 733.0) Pentatricopeptide Repeat Protein... | 0.04 | Orthogroups_2024-Update | |
Sobic.002G172500.3 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Sobic.002G358900.3 | No alias | RNA editing factor *(OTP90) | 0.03 | Orthogroups_2024-Update | |
Sobic.004G053100.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
Sobic.010G232700.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Solyc09g010070 | No alias | Pentatricopeptide repeat superfamily protein (AHRD V3.3... | 0.04 | Orthogroups_2024-Update | |
Solyc10g008590 | No alias | Pentatricopeptide repeat-containing protein, putative... | 0.03 | Orthogroups_2024-Update | |
Solyc11g071370 | No alias | Pentatricopeptide repeat-containing family protein (AHRD... | 0.02 | Orthogroups_2024-Update | |
Sopen01g033110 | No alias | PPR repeat | 0.04 | Orthogroups_2024-Update | |
Sopen03g026730 | No alias | PPR repeat | 0.04 | Orthogroups_2024-Update | |
Sopen03g029160 | No alias | PPR repeat family | 0.04 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0008270 | zinc ion binding | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No Predicted GO terms available for this sequence |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002885 | Pentatricopeptide_repeat | 46 | 76 |
IPR002885 | Pentatricopeptide_repeat | 170 | 200 |
IPR002885 | Pentatricopeptide_repeat | 336 | 357 |
IPR002885 | Pentatricopeptide_repeat | 201 | 230 |
IPR002885 | Pentatricopeptide_repeat | 77 | 107 |
IPR002885 | Pentatricopeptide_repeat | 17 | 44 |
IPR032867 | DYW_dom | 535 | 659 |
IPR002885 | Pentatricopeptide_repeat | 362 | 408 |
IPR002885 | Pentatricopeptide_repeat | 136 | 168 |
IPR002885 | Pentatricopeptide_repeat | 260 | 308 |
No external refs found! |