- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : (at1g72310 : 80.9) Encodes a putative RING-H2 zinc finger protein ATL3 (ATL3).; ATL3; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G53820.1); Has 10122 Blast hits to 10073 proteins in 295 species: Archae - 0; Bacteria - 0; Metazoa - 2687; Fungi - 787; Plants - 5131; Viruses - 60; Other Eukaryotes - 1457 (source: NCBI BLink). & (reliability: 161.8) & (original description: no original description)
Gene families : OG_42_0000003 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Picea release: MA_308999g0010 | |
| Cluster | HCCA clusters: Cluster_196 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| A4A49_18116 | No alias | ring-h2 finger protein atl78 | 0.03 | Orthogroups_2024-Update | |
| A4A49_36505 | No alias | e3 ubiquitin-protein ligase atl6 | 0.03 | Orthogroups_2024-Update | |
| A4A49_40065 | No alias | ring-h2 finger protein atl70 | 0.03 | Orthogroups_2024-Update | |
| At1g49210 | No alias | E3 ubiquitin-protein ligase ATL76... | 0.03 | Orthogroups_2024-Update | |
| At5g05280 | No alias | RING-H2 finger protein ATL73... | 0.03 | Orthogroups_2024-Update | |
| Bradi1g60390 | No alias | hypoxia-responsive family protein / zinc finger... | 0.03 | Orthogroups_2024-Update | |
| Bradi2g22650 | No alias | RING/U-box superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Brara.B02009.1 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase | 0.03 | Orthogroups_2024-Update | |
| Brara.B02021.1 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase | 0.05 | Orthogroups_2024-Update | |
| Brara.B02994.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
| Brara.C01887.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Brara.E01533.1 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase | 0.02 | Orthogroups_2024-Update | |
| Brara.F00385.1 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase | 0.04 | Orthogroups_2024-Update | |
| Brara.I02588.1 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase | 0.03 | Orthogroups_2024-Update | |
| Brara.J02480.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Glyma.02G194400 | No alias | RING/U-box superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.06G015200 | No alias | RING/U-box superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.07G062800 | No alias | RING/U-box superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.07G078800 | No alias | RING/U-box superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.08G070100 | No alias | RING/U-box superfamily protein | 0.04 | Orthogroups_2024-Update | |
| Glyma.11G242500 | No alias | RING/U-box superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.15G157400 | No alias | RING/U-box superfamily protein | 0.03 | Orthogroups_2024-Update | |
| HORVU1Hr1G070640.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
| HORVU6Hr1G022590.1 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase | 0.03 | Orthogroups_2024-Update | |
| LOC_Os01g53500 | No alias | RING-H2 finger protein ATL2M, putative, expressed | 0.02 | Orthogroups_2024-Update | |
| LOC_Os02g35144 | No alias | zinc finger, C3HC4 type domain containing protein, expressed | 0.02 | Orthogroups_2024-Update | |
| LOC_Os02g46100 | No alias | RING-H2 finger protein, putative, expressed | 0.02 | Orthogroups_2024-Update | |
| LOC_Os05g39940 | No alias | zinc finger, C3HC4 type domain containing protein, expressed | 0.03 | Orthogroups_2024-Update | |
| LOC_Os06g09310 | No alias | zinc finger, C3HC4 type domain containing protein, expressed | 0.02 | Orthogroups_2024-Update | |
| LOC_Os06g34870 | No alias | Zinc finger, C3HC4 type domain containing protein, expressed | 0.03 | Orthogroups_2024-Update | |
| LOC_Os12g24490 | No alias | zinc finger, C3HC4 type domain containing protein, expressed | 0.03 | Orthogroups_2024-Update | |
| PSME_00003016-RA | No alias | (at1g72200 : 114.0) RING/U-box superfamily protein;... | 0.04 | Orthogroups_2024-Update | |
| PSME_00054098-RA | No alias | (at3g16720 : 124.0) RING-H2 protein induced after... | 0.04 | Orthogroups_2024-Update | |
| Potri.001G162000 | No alias | RING/U-box superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Potri.005G244800 | No alias | RING/U-box superfamily protein | 0.04 | Orthogroups_2024-Update | |
| Potri.006G201500 | No alias | RING/U-box superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Potri.007G057300 | No alias | RING-H2 finger A3A | 0.03 | Orthogroups_2024-Update | |
| Potri.013G025800 | No alias | RING/U-box superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Pp1s41_270V6 | No alias | zinc finger (c3hc4-type ring finger) family protein | 0.03 | Orthogroups_2024-Update | |
| Seita.1G203900.1 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase | 0.03 | Orthogroups_2024-Update | |
| Seita.5G023000.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Sobic.004G114200.1 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase | 0.03 | Orthogroups_2024-Update | |
| Sobic.006G092200.1 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase | 0.03 | Orthogroups_2024-Update | |
| Solyc08g076830 | No alias | RING/U-box superfamily protein, putative (AHRD V3.3 ***... | 0.06 | Orthogroups_2024-Update | |
| Solyc09g075320 | No alias | RING/U-box superfamily protein (AHRD V3.3 *** AT4G15975.1) | 0.04 | Orthogroups_2024-Update | |
| Solyc11g005320 | No alias | RING/U-box superfamily protein (AHRD V3.3 *** AT1G49230.1) | 0.05 | Orthogroups_2024-Update | |
| Sopen01g048080 | No alias | Ring finger domain | 0.03 | Orthogroups_2024-Update | |
| Sopen11g001320 | No alias | Ring finger domain | 0.03 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0009141 | nucleoside triphosphate metabolic process | IEP | Predicted GO |
| BP | GO:0009143 | nucleoside triphosphate catabolic process | IEP | Predicted GO |
| BP | GO:0019439 | aromatic compound catabolic process | IEP | Predicted GO |
| BP | GO:0034404 | nucleobase-containing small molecule biosynthetic process | IEP | Predicted GO |
| BP | GO:0034655 | nucleobase-containing compound catabolic process | IEP | Predicted GO |
| BP | GO:0044270 | cellular nitrogen compound catabolic process | IEP | Predicted GO |
| BP | GO:0046434 | organophosphate catabolic process | IEP | Predicted GO |
| BP | GO:0046700 | heterocycle catabolic process | IEP | Predicted GO |
| MF | GO:0047429 | nucleoside-triphosphate diphosphatase activity | IEP | Predicted GO |
| BP | GO:1901292 | nucleoside phosphate catabolic process | IEP | Predicted GO |
| BP | GO:1901361 | organic cyclic compound catabolic process | IEP | Predicted GO |
No InterPro domains available for this sequence
| No external refs found! |