Solyc10g055610

Description : SKP1-like protein (AHRD V3.3 *** O82463_NICCL)

Gene families : OG_42_0000356 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000356_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Solyc10g055610
Cluster	HCCA clusters: Cluster_295

Target	Alias	Description	ECC score	Gene Family Method
GRMZM2G060394	No alias	SKP1-like 4	0.02	Orthogroups_2024-Update
Glyma.11G079600	No alias	S phase kinase-associated protein 1	0.03	Orthogroups_2024-Update
LOC_Os07g05180	No alias	Skp1 family, dimerisation domain containing protein, expressed	0.03	Orthogroups_2024-Update
PSME_00010542-RA	No alias	(at5g42190 : 182.0) Similar to SKP1 in yeast and humans...	0.03	Orthogroups_2024-Update
PSME_00055606-RA	No alias	(at1g75950 : 185.0) SKP1 is core component of the SCF...	0.02	Orthogroups_2024-Update
Pp1s28_148V6	No alias	kinetochore protein	0.02	Orthogroups_2024-Update
Sobic.010G218900.2	No alias	ASK-type linker component of SCF E3 ubiquitin ligase complexes	0.04	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEA	InterProScan predictions
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0019941	modification-dependent protein catabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043632	modification-dependent macromolecule catabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0051603	proteolysis involved in cellular protein catabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0005096	GTPase activator activity	IEP	Predicted GO
BP	GO:0005984	disaccharide metabolic process	IEP	Predicted GO
BP	GO:0005991	trehalose metabolic process	IEP	Predicted GO
BP	GO:0005992	trehalose biosynthetic process	IEP	Predicted GO
BP	GO:0007165	signal transduction	IEP	Predicted GO
MF	GO:0008047	enzyme activator activity	IEP	Predicted GO
BP	GO:0009311	oligosaccharide metabolic process	IEP	Predicted GO
BP	GO:0009312	oligosaccharide biosynthetic process	IEP	Predicted GO
MF	GO:0030695	GTPase regulator activity	IEP	Predicted GO
BP	GO:0046351	disaccharide biosynthetic process	IEP	Predicted GO
MF	GO:0060589	nucleoside-triphosphatase regulator activity	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR016073	Skp1_comp_POZ	1	59
IPR016072	Skp1_comp_dimer	101	148

External Links

No external refs found!