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  5. MA_322292g0010

MA_322292g0010


Description : (at4g18750 : 684.0) Encodes a pentatricopeptide (PPR) protein involved in leaf and root development. dot4 mutants have an aberrant midgap venation pattern in juvenile leaves and cotyledons.; DEFECTIVELY ORGANIZED TRIBUTARIES 4 (DOT4); INVOLVED IN: cotyledon vascular tissue pattern formation, phloem or xylem histogenesis, leaf vascular tissue pattern formation, leaf development; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G16860.1); Has 49728 Blast hits to 14531 proteins in 279 species: Archae - 0; Bacteria - 13; Metazoa - 210; Fungi - 140; Plants - 48642; Viruses - 0; Other Eukaryotes - 723 (source: NCBI BLink). & (q76c99|rf1_orysa : 142.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1368.0) & (original description: no original description)


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_322292g0010
Cluster HCCA clusters: Cluster_177

Target Alias Description ECC score Gene Family Method Actions
At3g16610 No alias Pentatricopeptide repeat-containing protein At3g16610... 0.04 Orthogroups_2024-Update
Glyma.01G048100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Glyma.02G227300 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 Orthogroups_2024-Update
PSME_00002078-RA No alias (at3g12770 : 644.0) Encodes a pentatricopeptide repeat... 0.03 Orthogroups_2024-Update
PSME_00002349-RA No alias (at3g12770 : 612.0) Encodes a pentatricopeptide repeat... 0.04 Orthogroups_2024-Update
PSME_00002609-RA No alias (at1g11290 : 641.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
PSME_00004170-RA No alias (at2g27610 : 399.0) Tetratricopeptide repeat (TPR)-like... 0.06 Orthogroups_2024-Update
PSME_00004346-RA No alias (at4g18750 : 679.0) Encodes a pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
PSME_00005432-RA No alias (at1g11290 : 677.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
PSME_00005903-RA No alias (at2g22070 : 612.0) pentatricopeptide (PPR)... 0.06 Orthogroups_2024-Update
PSME_00007543-RA No alias (at2g22070 : 594.0) pentatricopeptide (PPR)... 0.04 Orthogroups_2024-Update
PSME_00007652-RA No alias (at1g11290 : 614.0) Pentatricopeptide Repeat Protein... 0.04 Orthogroups_2024-Update
PSME_00008750-RA No alias (at1g15510 : 464.0) Encodes a pentatricopeptide repeat... 0.04 Orthogroups_2024-Update
PSME_00009010-RA No alias (at4g13650 : 679.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update
PSME_00010496-RA No alias (at2g22070 : 627.0) pentatricopeptide (PPR)... 0.04 Orthogroups_2024-Update
PSME_00011207-RA No alias (at3g63370 : 641.0) Encodes a chloroplast RNA editing... 0.03 Orthogroups_2024-Update
PSME_00012885-RA No alias (at1g08070 : 603.0) Encodes a chloroplast RNA editing... 0.05 Orthogroups_2024-Update
PSME_00016247-RA No alias (at3g12770 : 627.0) Encodes a pentatricopeptide repeat... 0.04 Orthogroups_2024-Update
PSME_00016248-RA No alias (at3g12770 : 631.0) Encodes a pentatricopeptide repeat... 0.04 Orthogroups_2024-Update
PSME_00017531-RA No alias (at1g11290 : 661.0) Pentatricopeptide Repeat Protein... 0.04 Orthogroups_2024-Update
PSME_00022685-RA No alias (at3g46790 : 552.0) Encodes a member of a PCMP (plant... 0.04 Orthogroups_2024-Update
PSME_00024530-RA No alias (at4g18750 : 707.0) Encodes a pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
PSME_00024580-RA No alias (at4g02750 : 440.0) Tetratricopeptide repeat (TPR)-like... 0.04 Orthogroups_2024-Update
PSME_00025245-RA No alias (at3g03580 : 656.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
PSME_00026226-RA No alias (at3g46790 : 588.0) Encodes a member of a PCMP (plant... 0.03 Orthogroups_2024-Update
PSME_00028931-RA No alias (at3g25970 : 541.0) Pentatricopeptide repeat (PPR)... 0.05 Orthogroups_2024-Update
PSME_00032414-RA No alias (at2g27610 : 637.0) Tetratricopeptide repeat (TPR)-like... 0.05 Orthogroups_2024-Update
PSME_00032959-RA No alias (at3g46790 : 529.0) Encodes a member of a PCMP (plant... 0.03 Orthogroups_2024-Update
PSME_00033965-RA No alias (at2g27610 : 573.0) Tetratricopeptide repeat (TPR)-like... 0.05 Orthogroups_2024-Update
PSME_00036495-RA No alias (at1g11290 : 559.0) Pentatricopeptide Repeat Protein... 0.04 Orthogroups_2024-Update
PSME_00041541-RA No alias (at3g12770 : 598.0) Encodes a pentatricopeptide repeat... 0.03 Orthogroups_2024-Update
PSME_00042206-RA No alias (at1g11290 : 595.0) Pentatricopeptide Repeat Protein... 0.04 Orthogroups_2024-Update
PSME_00051765-RA No alias (at3g03580 : 693.0) Tetratricopeptide repeat (TPR)-like... 0.05 Orthogroups_2024-Update
PSME_00055621-RA No alias (at1g16480 : 701.0) Tetratricopeptide repeat (TPR)-like... 0.04 Orthogroups_2024-Update
PSME_00056121-RA No alias (at4g13650 : 672.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update
PSME_00056168-RA No alias (at3g61170 : 686.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
PSME_00056594-RA No alias (at3g53360 : 383.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
PSME_00056606-RA No alias (at3g03580 : 586.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
PSME_00056663-RA No alias (at3g13770 : 545.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
PSME_00056843-RA No alias (at4g02750 : 457.0) Tetratricopeptide repeat (TPR)-like... 0.04 Orthogroups_2024-Update
PSME_00057058-RA No alias (at3g12770 : 592.0) Encodes a pentatricopeptide repeat... 0.03 Orthogroups_2024-Update
PSME_00057187-RA No alias (at1g11290 : 659.0) Pentatricopeptide Repeat Protein... 0.04 Orthogroups_2024-Update
Seita.2G373100.1 No alias RNA editing factor *(OTP90) 0.05 Orthogroups_2024-Update
Seita.7G042500.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.002G240900.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.002G292300.2 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.003G333200.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.010G258600.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sopen04g026710 No alias PPR repeat family 0.03 Orthogroups_2024-Update
Sopen05g002740 No alias PPR repeat family 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 170 217
IPR002885 Pentatricopeptide_repeat 575 622
IPR002885 Pentatricopeptide_repeat 373 420
IPR002885 Pentatricopeptide_repeat 473 521
IPR002885 Pentatricopeptide_repeat 81 101
IPR002885 Pentatricopeptide_repeat 718 744
IPR002885 Pentatricopeptide_repeat 229 285
IPR032867 DYW_dom 748 872
No external refs found!