1. Home
  2. Species
  3. Picea abies
  4. Sequence
  5. MA_3317g0020

MA_3317g0020


Description : (at4g13650 : 607.0) Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G16480.1); Has 61118 Blast hits to 14026 proteins in 284 species: Archae - 2; Bacteria - 18; Metazoa - 154; Fungi - 167; Plants - 59907; Viruses - 0; Other Eukaryotes - 870 (source: NCBI BLink). & (q76c99|rf1_orysa : 130.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1214.0) & (original description: no original description)


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_3317g0020
Cluster HCCA clusters: Cluster_83

Target Alias Description ECC score Gene Family Method Actions
Bradi1g27320 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Orthogroups_2024-Update
Brara.A01531.1 No alias plastidial RNA splicing factor *(OTP70) 0.03 Orthogroups_2024-Update
Brara.D01648.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.E02742.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.G03165.1 No alias RNA editing factor *(OTP87) 0.04 Orthogroups_2024-Update
Glyma.03G022002 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
MA_10243939g0010 No alias (at1g11290 : 615.0) Pentatricopeptide Repeat Protein... 0.06 Orthogroups_2024-Update
PSME_00003207-RA No alias (at3g03580 : 671.0) Tetratricopeptide repeat (TPR)-like... 0.05 Orthogroups_2024-Update
PSME_00004170-RA No alias (at2g27610 : 399.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
PSME_00008509-RA No alias (at1g11290 : 604.0) Pentatricopeptide Repeat Protein... 0.04 Orthogroups_2024-Update
PSME_00010951-RA No alias (at1g11290 : 537.0) Pentatricopeptide Repeat Protein... 0.05 Orthogroups_2024-Update
PSME_00031833-RA No alias (at3g13770 : 501.0) Pentatricopeptide repeat (PPR)... 0.05 Orthogroups_2024-Update
PSME_00052677-RA No alias (at2g13600 : 483.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
PSME_00054022-RA No alias (at1g68930 : 531.0) pentatricopeptide (PPR)... 0.05 Orthogroups_2024-Update
Solyc07g009220 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 384 429
IPR002885 Pentatricopeptide_repeat 683 730
IPR002885 Pentatricopeptide_repeat 582 629
IPR002885 Pentatricopeptide_repeat 282 330
IPR002885 Pentatricopeptide_repeat 75 123
IPR002885 Pentatricopeptide_repeat 178 225
IPR032867 DYW_dom 856 909
IPR002885 Pentatricopeptide_repeat 484 511
IPR002885 Pentatricopeptide_repeat 558 580
IPR002885 Pentatricopeptide_repeat 758 779
IPR002885 Pentatricopeptide_repeat 657 682
IPR002885 Pentatricopeptide_repeat 257 281
No external refs found!