1. Home
  2. Species
  3. Picea abies
  4. Sequence
  5. MA_356g0010

MA_356g0010


Description : (at3g23330 : 487.0) Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: mitochondrial editing factor 22 (TAIR:AT3G12770.1); Has 38045 Blast hits to 13879 proteins in 261 species: Archae - 0; Bacteria - 10; Metazoa - 50; Fungi - 109; Plants - 37267; Viruses - 0; Other Eukaryotes - 609 (source: NCBI BLink). & (q76c99|rf1_orysa : 91.3) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 928.0) & (original description: no original description)


Gene families : OG_42_0002530 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002530_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_356g0010
Cluster HCCA clusters: Cluster_83

Target Alias Description ECC score Gene Family Method Actions
Brara.I01471.1 No alias RNA editing factor *(MEF9) 0.04 Orthogroups_2024-Update
PSME_00024555-RA No alias (at4g02750 : 413.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
Potri.004G125500 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Solyc05g009400 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.04 Orthogroups_2024-Update
Sopen05g005200 No alias PPR repeat 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0015095 magnesium ion transmembrane transporter activity IEP Predicted GO
BP GO:0015693 magnesium ion transport IEP Predicted GO
BP GO:0070838 divalent metal ion transport IEP Predicted GO
BP GO:0072511 divalent inorganic cation transport IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 187 234
IPR002885 Pentatricopeptide_repeat 289 336
IPR002885 Pentatricopeptide_repeat 86 134
IPR002885 Pentatricopeptide_repeat 430 458
IPR032867 DYW_dom 462 575
No external refs found!