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  5. MA_35712g0010

MA_35712g0010


Description : (at4g11880 : 102.0) AGL12, AGL14, and AGL17 are all preferentially expressed in root tissues and therefore represent the only characterized MADS box genes expressed in roots.; AGAMOUS-like 14 (AGL14); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 19 (TAIR:AT4G22950.1); Has 7256 Blast hits to 7253 proteins in 915 species: Archae - 0; Bacteria - 4; Metazoa - 632; Fungi - 309; Plants - 6224; Viruses - 0; Other Eukaryotes - 87 (source: NCBI BLink). & (q9xj60|mad50_orysa : 102.0) MADS-box transcription factor 50 (OsMADS50) (Protein SUPPRESSOR OF CONSTANS OVEREXPRESSION 1-like) (OsSOC1) (Protein AGAMOUS-like 20) (RMADS208) - Oryza sativa (Rice) & (reliability: 186.4) & (original description: no original description)


Gene families : OG_42_0000009 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_35712g0010
Cluster HCCA clusters: Cluster_19

Target Alias Description ECC score Gene Family Method Actions
A4A49_18078 No alias developmental protein sepallata 1 0.02 Orthogroups_2024-Update
A4A49_18989 No alias agamous-like mads-box protein agl19 0.03 Orthogroups_2024-Update
A4A49_26362 No alias floral homeotic protein globosa 0.03 Orthogroups_2024-Update
A4A49_27621 No alias agamous-like mads-box protein agl9 0.03 Orthogroups_2024-Update
At1g69120 No alias AP1 [Source:UniProtKB/TrEMBL;Acc:A0A178W846] 0.02 Orthogroups_2024-Update
Bradi1g69890 No alias K-box region and MADS-box transcription factor family protein 0.02 Orthogroups_2024-Update
Bradi3g41260 No alias K-box region and MADS-box transcription factor family protein 0.03 Orthogroups_2024-Update
Brara.H01136.1 No alias MADS/AGL-type transcription factor 0.03 Orthogroups_2024-Update
Brara.K00198.1 No alias MADS/AGL-type transcription factor 0.03 Orthogroups_2024-Update
Glyma.01G020500 No alias AGAMOUS-like 21 0.02 Orthogroups_2024-Update
Glyma.07G081300 No alias AGAMOUS-like 6 0.02 Orthogroups_2024-Update
Glyma.08G310100 No alias K-box region and MADS-box transcription factor family protein 0.03 Orthogroups_2024-Update
Glyma.11G252300 No alias K-box region and MADS-box transcription factor family protein 0.03 Orthogroups_2024-Update
Glyma.13G256900 No alias K-box region and MADS-box transcription factor family protein 0.02 Orthogroups_2024-Update
HORVU1Hr1G063620.2 No alias component *(PISTILLATA) of AP3-PISTILLATA organ-identity... 0.02 Orthogroups_2024-Update
HORVU5Hr1G095710.1 No alias MADS/AGL-type transcription factor 0.02 Orthogroups_2024-Update
LOC_Os04g38770 No alias OsMADS61 - MADS-box family gene with MIKCc type-box, expressed 0.02 Orthogroups_2024-Update
Potri.008G098500 No alias K-box region and MADS-box transcription factor family protein 0.04 Orthogroups_2024-Update
Pp1s163_73V6 No alias mikc* mads-box transcription factor 0.02 Orthogroups_2024-Update
Seita.1G209300.1 No alias MADS/AGL-type transcription factor 0.01 Orthogroups_2024-Update
Sobic.007G192900.1 No alias MADS/AGL-type transcription factor 0.03 Orthogroups_2024-Update
Sobic.009G102200.2 No alias MADS/AGL-type transcription factor 0.01 Orthogroups_2024-Update
Sobic.010G221500.1 No alias MADS/AGL-type transcription factor 0.03 Orthogroups_2024-Update
Solyc08g067230 No alias MADS box transcription factor (AHRD V3.3 *** G3EIU8_9SOLA) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
MF GO:0046983 protein dimerization activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0005094 Rho GDP-dissociation inhibitor activity IEP Predicted GO
MF GO:0005506 iron ion binding IEP Predicted GO
BP GO:0006325 chromatin organization IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0016043 cellular component organization IEP Predicted GO
BP GO:0016197 endosomal transport IEP Predicted GO
BP GO:0016482 cytosolic transport IEP Predicted GO
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Predicted GO
MF GO:0020037 heme binding IEP Predicted GO
BP GO:0022607 cellular component assembly IEP Predicted GO
CC GO:0030906 retromer, cargo-selective complex IEP Predicted GO
BP GO:0034622 cellular protein-containing complex assembly IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
BP GO:0042147 retrograde transport, endosome to Golgi IEP Predicted GO
BP GO:0043933 protein-containing complex subunit organization IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
BP GO:0065003 protein-containing complex assembly IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
InterPro domains Description Start Stop
IPR002100 TF_MADSbox 10 57
No external refs found!