1. Home
  2. Species
  3. Picea abies
  4. Sequence
  5. MA_36141g0010

MA_36141g0010


Description : (at3g54420 : 245.0) encodes an EP3 chitinase that is expressed during somatic embryogenesis in 'nursing' cells surrounding the embryos but not in embryos themselves. The gene is also expressed in mature pollen and growing pollen tubes until they enter the receptive synergid, but not in endosperm and integuments as in carrot. Post-embryonically, expression is found in hydathodes, stipules, root epidermis and emerging root hairs.; homolog of carrot EP3-3 chitinase (EP3); FUNCTIONS IN: chitinase activity; INVOLVED IN: somatic embryogenesis, plant-type hypersensitive response; LOCATED IN: cell wall; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Chitin-binding, type 1, conserved site (InterPro:IPR018371), Glycoside hydrolase, family 19 (InterPro:IPR016283), Chitin-binding, type 1 (InterPro:IPR001002), Glycoside hydrolase, family 19, catalytic (InterPro:IPR000726); BEST Arabidopsis thaliana protein match is: Chitinase family protein (TAIR:AT2G43590.1); Has 2660 Blast hits to 2432 proteins in 504 species: Archae - 0; Bacteria - 547; Metazoa - 34; Fungi - 178; Plants - 1776; Viruses - 22; Other Eukaryotes - 103 (source: NCBI BLink). & (p29022|chia_maize : 244.0) Endochitinase A precursor (EC 3.2.1.14) (Seed chitinase A) - Zea mays (Maize) & (reliability: 490.0) & (original description: no original description)


Gene families : OG_42_0000525 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000525_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_36141g0010
Cluster HCCA clusters: Cluster_142

Target Alias Description ECC score Gene Family Method Actions
426710 No alias Chitinase family protein 0.03 Orthogroups_2024-Update
At2g43570 No alias CHI [Source:UniProtKB/TrEMBL;Acc:A0A178W3M3] 0.03 Orthogroups_2024-Update
Bradi5g14430 No alias homolog of carrot EP3-3 chitinase 0.04 Orthogroups_2024-Update
LOC_Os02g39330 No alias CHIT1 - Chitinase family protein precursor, expressed 0.02 Orthogroups_2024-Update
PSME_00019563-RA No alias (at3g54420 : 211.0) encodes an EP3 chitinase that is... 0.08 Orthogroups_2024-Update
PSME_00029190-RA No alias (p29022|chia_maize : 256.0) Endochitinase A precursor... 0.06 Orthogroups_2024-Update
PSME_00029419-RA No alias (at3g54420 : 244.0) encodes an EP3 chitinase that is... 0.04 Orthogroups_2024-Update
PSME_00030535-RA No alias (at3g54420 : 248.0) encodes an EP3 chitinase that is... 0.03 Orthogroups_2024-Update
PSME_00030955-RA No alias (at3g54420 : 243.0) encodes an EP3 chitinase that is... 0.04 Orthogroups_2024-Update
PSME_00036436-RA No alias (at3g54420 : 249.0) encodes an EP3 chitinase that is... 0.04 Orthogroups_2024-Update
PSME_00037478-RA No alias (at3g54420 : 236.0) encodes an EP3 chitinase that is... 0.04 Orthogroups_2024-Update
PSME_00037516-RA No alias (at3g54420 : 211.0) encodes an EP3 chitinase that is... 0.04 Orthogroups_2024-Update
PSME_00037636-RA No alias (p29022|chia_maize : 228.0) Endochitinase A precursor... 0.07 Orthogroups_2024-Update
PSME_00039570-RA No alias (p29023|chib_maize : 253.0) Endochitinase B precursor... 0.04 Orthogroups_2024-Update
PSME_00046774-RA No alias (at3g54420 : 162.0) encodes an EP3 chitinase that is... 0.07 Orthogroups_2024-Update
PSME_00046775-RA No alias (at3g54420 : 171.0) encodes an EP3 chitinase that is... 0.03 Orthogroups_2024-Update
PSME_00047416-RA No alias (p29022|chia_maize : 241.0) Endochitinase A precursor... 0.03 Orthogroups_2024-Update
PSME_00050706-RA No alias (p29022|chia_maize : 237.0) Endochitinase A precursor... 0.04 Orthogroups_2024-Update
PSME_00050767-RA No alias (p29022|chia_maize : 240.0) Endochitinase A precursor... 0.03 Orthogroups_2024-Update
PSME_00051412-RA No alias (at3g54420 : 249.0) encodes an EP3 chitinase that is... 0.03 Orthogroups_2024-Update
PSME_00051432-RA No alias (at3g54420 : 213.0) encodes an EP3 chitinase that is... 0.05 Orthogroups_2024-Update
PSME_00052222-RA No alias (at3g54420 : 236.0) encodes an EP3 chitinase that is... 0.04 Orthogroups_2024-Update
PSME_00052568-RA No alias (p29022|chia_maize : 277.0) Endochitinase A precursor... 0.03 Orthogroups_2024-Update
Pp1s197_7V6 No alias class i chitinase 0.02 Orthogroups_2024-Update
Pp1s197_8V6 No alias chitinase 0.03 Orthogroups_2024-Update
Seita.7G150600.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.7G150700.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.006G132400.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.006G132500.1 No alias Unknown function 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004568 chitinase activity IEA InterProScan predictions
BP GO:0006032 chitin catabolic process IEA InterProScan predictions
BP GO:0016998 cell wall macromolecule catabolic process IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000726 Glyco_hydro_19_cat 31 229
No external refs found!