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  5. MA_373708g0010

MA_373708g0010


Description : (at3g22470 : 283.0) Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G12300.1); Has 71386 Blast hits to 15586 proteins in 313 species: Archae - 4; Bacteria - 76; Metazoa - 1075; Fungi - 1368; Plants - 66381; Viruses - 0; Other Eukaryotes - 2482 (source: NCBI BLink). & (q76c99|rf1_orysa : 238.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 566.0) & (original description: no original description)


Gene families : OG_42_0001385 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001385_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_373708g0010
Cluster HCCA clusters: Cluster_266

Target Alias Description ECC score Gene Family Method Actions
MA_12730g0010 No alias (at5g55840 : 459.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update
MA_4589g0010 No alias (at3g22470 : 368.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update
MA_959553g0010 No alias (at3g22470 : 392.0) Pentatricopeptide repeat (PPR)... 0.05 Orthogroups_2024-Update
PSME_00010606-RA No alias (at3g22470 : 287.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
PSME_00012031-RA No alias (at3g22470 : 323.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0005643 nuclear pore IEP Predicted GO
BP GO:0008033 tRNA processing IEP Predicted GO
CC GO:0016021 integral component of membrane IEP Predicted GO
CC GO:0031224 intrinsic component of membrane IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 228 244
IPR002885 Pentatricopeptide_repeat 66 94
IPR002885 Pentatricopeptide_repeat 316 365
IPR002885 Pentatricopeptide_repeat 168 217
IPR002885 Pentatricopeptide_repeat 246 295
IPR002885 Pentatricopeptide_repeat 383 415
IPR002885 Pentatricopeptide_repeat 96 127
IPR002885 Pentatricopeptide_repeat 130 162
No external refs found!