Description : (at3g12770 : 649.0) Encodes a pentatricopeptide repeat protein (PPR) protein involved in mitochondrial mRNA editing.; mitochondrial editing factor 22 (MEF22); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G11290.1); Has 43523 Blast hits to 14475 proteins in 290 species: Archae - 0; Bacteria - 15; Metazoa - 148; Fungi - 158; Plants - 42447; Viruses - 0; Other Eukaryotes - 755 (source: NCBI BLink). & (q76c99|rf1_orysa : 131.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1298.0) & (original description: no original description)
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Picea release: MA_38266g0010 | |
Cluster | HCCA clusters: Cluster_215 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
82255 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.05 | Orthogroups_2024-Update | |
Bradi1g12697 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.16G206000 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.06 | Orthogroups_2024-Update | |
Glyma.18G288100 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.04 | Orthogroups_2024-Update | |
HORVU2Hr1G084530.3 | No alias | RNA editing factor *(SLO4) | 0.03 | Orthogroups_2024-Update | |
HORVU5Hr1G113840.2 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
PSME_00009010-RA | No alias | (at4g13650 : 679.0) Pentatricopeptide repeat (PPR)... | 0.04 | Orthogroups_2024-Update | |
PSME_00011207-RA | No alias | (at3g63370 : 641.0) Encodes a chloroplast RNA editing... | 0.03 | Orthogroups_2024-Update | |
PSME_00016247-RA | No alias | (at3g12770 : 627.0) Encodes a pentatricopeptide repeat... | 0.03 | Orthogroups_2024-Update | |
PSME_00016248-RA | No alias | (at3g12770 : 631.0) Encodes a pentatricopeptide repeat... | 0.03 | Orthogroups_2024-Update | |
PSME_00016653-RA | No alias | (at3g02010 : 685.0) Pentatricopeptide repeat (PPR)... | 0.04 | Orthogroups_2024-Update | |
PSME_00018763-RA | No alias | (at1g11290 : 389.0) Pentatricopeptide Repeat Protein... | 0.04 | Orthogroups_2024-Update | |
PSME_00022685-RA | No alias | (at3g46790 : 552.0) Encodes a member of a PCMP (plant... | 0.03 | Orthogroups_2024-Update | |
PSME_00033049-RA | No alias | (at1g11290 : 583.0) Pentatricopeptide Repeat Protein... | 0.06 | Orthogroups_2024-Update | |
PSME_00035769-RA | No alias | (at4g13650 : 702.0) Pentatricopeptide repeat (PPR)... | 0.04 | Orthogroups_2024-Update | |
PSME_00046650-RA | No alias | (at4g21300 : 573.0) Tetratricopeptide repeat (TPR)-like... | 0.03 | Orthogroups_2024-Update | |
PSME_00054674-RA | No alias | (at4g33170 : 289.0) Tetratricopeptide repeat (TPR)-like... | 0.04 | Orthogroups_2024-Update | |
PSME_00056121-RA | No alias | (at4g13650 : 672.0) Pentatricopeptide repeat (PPR)... | 0.03 | Orthogroups_2024-Update | |
PSME_00056779-RA | No alias | (at4g13650 : 709.0) Pentatricopeptide repeat (PPR)... | 0.04 | Orthogroups_2024-Update | |
PSME_00056843-RA | No alias | (at4g02750 : 457.0) Tetratricopeptide repeat (TPR)-like... | 0.04 | Orthogroups_2024-Update | |
PSME_00057098-RA | No alias | (at2g13600 : 538.0) Pentatricopeptide repeat (PPR)... | 0.04 | Orthogroups_2024-Update | |
PSME_00057187-RA | No alias | (at1g11290 : 659.0) Pentatricopeptide Repeat Protein... | 0.03 | Orthogroups_2024-Update | |
Seita.5G242100.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
Sobic.010G153600.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0008270 | zinc ion binding | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0004809 | tRNA (guanine-N2-)-methyltransferase activity | IEP | Predicted GO |
BP | GO:0006399 | tRNA metabolic process | IEP | Predicted GO |
BP | GO:0008033 | tRNA processing | IEP | Predicted GO |
MF | GO:0008170 | N-methyltransferase activity | IEP | Predicted GO |
MF | GO:0008173 | RNA methyltransferase activity | IEP | Predicted GO |
MF | GO:0008175 | tRNA methyltransferase activity | IEP | Predicted GO |
MF | GO:0008757 | S-adenosylmethionine-dependent methyltransferase activity | IEP | Predicted GO |
MF | GO:0016423 | tRNA (guanine) methyltransferase activity | IEP | Predicted GO |
BP | GO:0034470 | ncRNA processing | IEP | Predicted GO |
BP | GO:0034660 | ncRNA metabolic process | IEP | Predicted GO |
MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR032867 | DYW_dom | 623 | 747 |
IPR002885 | Pentatricopeptide_repeat | 121 | 146 |
IPR002885 | Pentatricopeptide_repeat | 525 | 548 |
IPR002885 | Pentatricopeptide_repeat | 149 | 194 |
IPR002885 | Pentatricopeptide_repeat | 450 | 496 |
IPR002885 | Pentatricopeptide_repeat | 247 | 295 |
IPR002885 | Pentatricopeptide_repeat | 348 | 396 |
No external refs found! |