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  5. MA_4040g0010

MA_4040g0010


Description : (at5g03240 : 338.0) encodes ubiquitin that is attached to proteins destined for degradation. UBQ3 is most homologous with UBQ4, and is expressed in higher levels in vegetative tissue but lower levels in flowers than UBQ4. UBQ3 encodes different number of ubiquitins in different ecotypes. UBQ3 transcript level is modulated by UV-B and light/dark treatments.; polyubiquitin 3 (UBQ3); INVOLVED IN: protein modification process, response to UV-B, response to light stimulus, ubiquitin-dependent protein catabolic process; LOCATED IN: intracellular, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin subgroup (InterPro:IPR019956), Ubiquitin conserved site (InterPro:IPR019954), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: ubiquitin 4 (TAIR:AT5G20620.1); Has 26684 Blast hits to 7218 proteins in 726 species: Archae - 0; Bacteria - 80; Metazoa - 12490; Fungi - 3021; Plants - 5505; Viruses - 651; Other Eukaryotes - 4937 (source: NCBI BLink). & (p69326|ubiq_wheat : 132.0) Ubiquitin - Triticum aestivum (Wheat) & (reliability: 676.0) & (original description: no original description)


Gene families : OG_42_0000048 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000048_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_4040g0010
Cluster HCCA clusters: Cluster_13

Target Alias Description ECC score Gene Family Method Actions
Glyma.13G138600 No alias ubiquitin 4 0.03 Orthogroups_2024-Update
Kfl00013_0170 kfl00013_0170_v1.... (at5g03240 : 108.0) encodes ubiquitin that is attached... 0.03 Orthogroups_2024-Update
MA_115394g0010 No alias (at5g03240 : 284.0) encodes ubiquitin that is attached... 0.04 Orthogroups_2024-Update
MA_13396g0020 No alias (at5g20620 : 280.0) encodes a ubiquitin polyprotein.;... 0.03 Orthogroups_2024-Update
MA_20231g0010 No alias (at5g03240 : 528.0) encodes ubiquitin that is attached... 0.04 Orthogroups_2024-Update
MA_9401507g0010 No alias (at5g03240 : 202.0) encodes ubiquitin that is attached... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0008289 lipid binding IEP Predicted GO
InterPro domains Description Start Stop
IPR000626 Ubiquitin_dom 3 74
IPR000626 Ubiquitin_dom 180 251
IPR000626 Ubiquitin_dom 104 170
No external refs found!