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  5. MA_41251g0030

MA_41251g0030


Description : (at4g05320 : 844.0) One of five polyubiquitin genes in A. thaliana. These genes encode the highly conserved 76-amino acid protein ubiquitin that is covalently attached to substrate proteins targeting most for degradation. Polyubiquitin genes are characterized by the presence of tandem repeats of the 228 bp that encode a ubiquitin monomer. Induced by salicylic acid. Independent of NPR1 for their induction by salicylic acid.; polyubiquitin 10 (UBQ10); CONTAINS InterPro DOMAIN/s: Ubiquitin subgroup (InterPro:IPR019956), Ubiquitin conserved site (InterPro:IPR019954), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: ubiquitin 4 (TAIR:AT5G20620.1); Has 32669 Blast hits to 7219 proteins in 726 species: Archae - 0; Bacteria - 99; Metazoa - 15287; Fungi - 3767; Plants - 6623; Viruses - 815; Other Eukaryotes - 6078 (source: NCBI BLink). & (p69326|ubiq_wheat : 150.0) Ubiquitin - Triticum aestivum (Wheat) & (reliability: 1688.0) & (original description: no original description)


Gene families : OG_42_0000048 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000048_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Picea release: MA_41251g0030
Cluster HCCA clusters: Cluster_13

Target Alias Description ECC score Gene Family Method Actions
173723 No alias polyubiquitin 10 0.03 Orthogroups_2024-Update
At5g09340 No alias Ubiquitin family protein [Source:UniProtKB/TrEMBL;Acc:Q9FY81] 0.03 Orthogroups_2024-Update
Bradi1g32700 No alias polyubiquitin 10 0.06 Orthogroups_2024-Update
GRMZM2G419891 No alias polyubiquitin 10 0.02 Orthogroups_2024-Update
Glyma.13G138600 No alias ubiquitin 4 0.05 Orthogroups_2024-Update
LOC_Os04g53620 No alias ubiquitin family protein, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os10g34960 No alias ubiquitin family protein, putative, expressed 0.02 Orthogroups_2024-Update
Seita.3G398300.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.002G178700.2 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.002G292500.1 No alias component *(eL40) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0001671 ATPase activator activity IEP Predicted GO
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
MF GO:0004842 ubiquitin-protein transferase activity IEP Predicted GO
MF GO:0008047 enzyme activator activity IEP Predicted GO
BP GO:0016567 protein ubiquitination IEP Predicted GO
MF GO:0019787 ubiquitin-like protein transferase activity IEP Predicted GO
BP GO:0032446 protein modification by small protein conjugation IEP Predicted GO
MF GO:0051087 chaperone binding IEP Predicted GO
MF GO:0060590 ATPase regulator activity IEP Predicted GO
BP GO:0070647 protein modification by small protein conjugation or removal IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
InterPro domains Description Start Stop
IPR000626 Ubiquitin_dom 3 74
IPR000626 Ubiquitin_dom 376 447
IPR000626 Ubiquitin_dom 173 219
IPR000626 Ubiquitin_dom 224 295
IPR000626 Ubiquitin_dom 79 150
IPR000626 Ubiquitin_dom 452 523
IPR000626 Ubiquitin_dom 300 371
No external refs found!