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  5. MA_415393g0010

MA_415393g0010


Description : (at3g19380 : 146.0) plant U-box 25 (PUB25); FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: response to chitin; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: plant U-box 26 (TAIR:AT1G49780.1); Has 2521 Blast hits to 2449 proteins in 133 species: Archae - 0; Bacteria - 22; Metazoa - 177; Fungi - 24; Plants - 2091; Viruses - 3; Other Eukaryotes - 204 (source: NCBI BLink). & (q64ha9|spl11_orysa : 90.9) Spotted leaf protein 11 (Spotted leaf11) (Cell death-related protein SPL11) - Oryza sativa (Rice) & (reliability: 264.0) & (original description: no original description)


Gene families : OG_42_0000112 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000112_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_415393g0010
Cluster HCCA clusters: Cluster_154

Target Alias Description ECC score Gene Family Method Actions
416356 No alias plant U-box 24 0.03 Orthogroups_2024-Update
426053 No alias plant U-box 24 0.03 Orthogroups_2024-Update
A4A49_34426 No alias e3 ubiquitin-protein ligase pub24 0.03 Orthogroups_2024-Update
At1g49780 No alias U-box domain-containing protein 26... 0.03 Orthogroups_2024-Update
At1g66160 No alias U-box domain-containing protein 20... 0.04 Orthogroups_2024-Update
Bradi5g09720 No alias plant U-box 22 0.02 Orthogroups_2024-Update
Bradi5g27660 No alias CYS, MET, PRO, and GLY protein 2 0.02 Orthogroups_2024-Update
Brara.B01640.1 No alias E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Brara.C03388.1 No alias E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
Brara.C03699.1 No alias E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Brara.D00589.1 No alias E3 ubiquitin ligase 0.05 Orthogroups_2024-Update
Brara.D02179.1 No alias E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Brara.E02265.1 No alias U-Box-group-III E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
GRMZM2G041141 No alias plant U-box 26 0.03 Orthogroups_2024-Update
GRMZM2G055052 No alias CYS, MET, PRO, and GLY protein 1 0.04 Orthogroups_2024-Update
GRMZM2G071484 No alias plant U-box 22 0.05 Orthogroups_2024-Update
GRMZM5G811633 No alias plant U-box 26 0.03 Orthogroups_2024-Update
GRMZM5G855994 No alias ARM repeat superfamily protein 0.02 Orthogroups_2024-Update
Glyma.02G083900 No alias ARM repeat superfamily protein 0.04 Orthogroups_2024-Update
Glyma.10G262600 No alias plant U-box 22 0.02 Orthogroups_2024-Update
Glyma.12G095100 No alias plant U-box 23 0.03 Orthogroups_2024-Update
Glyma.18G042100 No alias ARM repeat superfamily protein 0.03 Orthogroups_2024-Update
HORVU2Hr1G105720.3 No alias Unknown function 0.05 Orthogroups_2024-Update
HORVU4Hr1G064070.1 No alias E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
LOC_Os02g34410 No alias U-box domain-containing protein, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os02g46500 No alias U-box, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os04g34030 No alias U-box domain-containing protein, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os10g03440 No alias avr9/Cf-9 rapidly elicited protein 74, putative, expressed 0.03 Orthogroups_2024-Update
MA_6335g0010 No alias "(at5g64660 : 281.0) ""CYS, MET, PRO, and GLY protein... 0.03 Orthogroups_2024-Update
PSME_00022617-RA No alias (at3g52450 : 247.0) Encodes a cytoplasmically localized... 0.04 Orthogroups_2024-Update
PSME_00043995-RA No alias (at1g49780 : 227.0) plant U-box 26 (PUB26); FUNCTIONS... 0.04 Orthogroups_2024-Update
PSME_00048709-RA No alias (at2g35930 : 183.0) Encodes a cytoplasmically localized... 0.03 Orthogroups_2024-Update
PSME_00049378-RA No alias (at3g19380 : 185.0) plant U-box 25 (PUB25); FUNCTIONS... 0.03 Orthogroups_2024-Update
PSME_00056516-RA No alias (at3g19380 : 420.0) plant U-box 25 (PUB25); FUNCTIONS... 0.04 Orthogroups_2024-Update
Potri.009G016200 No alias plant U-box 23 0.02 Orthogroups_2024-Update
Seita.7G095100.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.001G441100.1 No alias E3 ubiquitin ligase 0.06 Orthogroups_2024-Update
Sobic.004G169200.1 No alias E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
Sobic.004G169900.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.010G102000.1 No alias E3 ubiquitin ligase 0.05 Orthogroups_2024-Update
Solyc01g005160 No alias Avr9/Cf-9 rapidly elicited protein 1 0.02 Orthogroups_2024-Update
Solyc01g080920 No alias LOW QUALITY:U-box domain-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc01g107980 No alias U-box domain-containing family protein (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update
Solyc04g008100 No alias U-box domain-containing protein (AHRD V3.3 *** A0A0A0RAL4_9ROSI) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA InterProScan predictions
BP GO:0016567 protein ubiquitination IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000796 condensin complex IEP Predicted GO
BP GO:0006323 DNA packaging IEP Predicted GO
BP GO:0007076 mitotic chromosome condensation IEP Predicted GO
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Predicted GO
BP GO:0022402 cell cycle process IEP Predicted GO
BP GO:0030261 chromosome condensation IEP Predicted GO
MF GO:0030976 thiamine pyrophosphate binding IEP Predicted GO
BP GO:0051276 chromosome organization IEP Predicted GO
BP GO:0071103 DNA conformation change IEP Predicted GO
MF GO:1901681 sulfur compound binding IEP Predicted GO
BP GO:1903047 mitotic cell cycle process IEP Predicted GO
InterPro domains Description Start Stop
IPR003613 Ubox_domain 28 72
No external refs found!