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  5. MA_42081g0010

MA_42081g0010


Description : (at5g55480 : 146.0) Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development.; SHV3-like 1 (SVL1); FUNCTIONS IN: phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity; INVOLVED IN: trichome differentiation, cell wall pectin metabolic process, glycerol metabolic process, guard cell morphogenesis, plant-type cell wall cellulose metabolic process; LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 30 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), Glycerophosphoryl diester phosphodiesterase (InterPro:IPR004129); BEST Arabidopsis thaliana protein match is: PLC-like phosphodiesterase family protein (TAIR:AT4G26690.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 292.0) & (original description: no original description)


Gene families : OG_42_0000724 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000724_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_42081g0010
Cluster HCCA clusters: Cluster_223

Target Alias Description ECC score Gene Family Method Actions
Bradi2g18800 No alias SHV3-like 5 0.07 Orthogroups_2024-Update
Seita.6G202800.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Sobic.007G213300.2 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.010G202000.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Sopen02g003070 No alias Glycerophosphoryl diester phosphodiesterase family 0.03 Orthogroups_2024-Update
Sopen12g007450 No alias Glycerophosphoryl diester phosphodiesterase family 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0006629 lipid metabolic process IEA InterProScan predictions
MF GO:0008081 phosphoric diester hydrolase activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0016887 ATPase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR030395 GP_PDE_dom 3 127
No external refs found!