Description : (at1g20230 : 666.0) Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G23330.1); Has 43615 Blast hits to 14351 proteins in 266 species: Archae - 0; Bacteria - 17; Metazoa - 112; Fungi - 108; Plants - 42635; Viruses - 0; Other Eukaryotes - 743 (source: NCBI BLink). & (q76c99|rf1_orysa : 159.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1332.0) & (original description: no original description)
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Picea release: MA_432641g0020 | |
Cluster | HCCA clusters: Cluster_237 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
399 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | Orthogroups_2024-Update | |
Bradi1g47160 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.04 | Orthogroups_2024-Update | |
Bradi1g60637 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Bradi2g45250 | No alias | mitochondrial RNAediting factor 1 | 0.03 | Orthogroups_2024-Update | |
Bradi4g22520 | No alias | mitochondrial editing factor 22 | 0.03 | Orthogroups_2024-Update | |
Brara.B03138.1 | No alias | RNA editing factor *(OTP85) | 0.04 | Orthogroups_2024-Update | |
GRMZM2G163359 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
GRMZM2G168170 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.09G088000 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | Orthogroups_2024-Update | |
Glyma.18G288100 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.04 | Orthogroups_2024-Update | |
HORVU0Hr1G015630.5 | No alias | Unknown function | 0.06 | Orthogroups_2024-Update | |
HORVU6Hr1G069210.1 | No alias | Unknown function | 0.05 | Orthogroups_2024-Update | |
PSME_00005903-RA | No alias | (at2g22070 : 612.0) pentatricopeptide (PPR)... | 0.03 | Orthogroups_2024-Update | |
PSME_00044695-RA | No alias | (at2g22070 : 545.0) pentatricopeptide (PPR)... | 0.03 | Orthogroups_2024-Update | |
Seita.3G006500.1 | No alias | Unknown function | 0.07 | Orthogroups_2024-Update | |
Sobic.007G201400.1 | No alias | RNA editing factor *(DOT4) | 0.04 | Orthogroups_2024-Update | |
Solyc04g076330 | No alias | Pentatricopeptide repeat-containing protein (AHRD V3.3... | 0.04 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0008270 | zinc ion binding | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0004252 | serine-type endopeptidase activity | IEP | Predicted GO |
BP | GO:0006082 | organic acid metabolic process | IEP | Predicted GO |
BP | GO:0006520 | cellular amino acid metabolic process | IEP | Predicted GO |
BP | GO:0006855 | drug transmembrane transport | IEP | Predicted GO |
MF | GO:0015238 | drug transmembrane transporter activity | IEP | Predicted GO |
BP | GO:0015893 | drug transport | IEP | Predicted GO |
MF | GO:0016597 | amino acid binding | IEP | Predicted GO |
MF | GO:0016741 | transferase activity, transferring one-carbon groups | IEP | Predicted GO |
MF | GO:0016743 | carboxyl- or carbamoyltransferase activity | IEP | Predicted GO |
BP | GO:0019752 | carboxylic acid metabolic process | IEP | Predicted GO |
MF | GO:0022804 | active transmembrane transporter activity | IEP | Predicted GO |
MF | GO:0031406 | carboxylic acid binding | IEP | Predicted GO |
MF | GO:0042626 | ATPase activity, coupled to transmembrane movement of substances | IEP | Predicted GO |
MF | GO:0043177 | organic acid binding | IEP | Predicted GO |
BP | GO:0043436 | oxoacid metabolic process | IEP | Predicted GO |
MF | GO:0043492 | ATPase activity, coupled to movement of substances | IEP | Predicted GO |
BP | GO:0044281 | small molecule metabolic process | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002885 | Pentatricopeptide_repeat | 125 | 155 |
IPR002885 | Pentatricopeptide_repeat | 97 | 124 |
IPR032867 | DYW_dom | 568 | 692 |
IPR002885 | Pentatricopeptide_repeat | 258 | 301 |
IPR002885 | Pentatricopeptide_repeat | 395 | 442 |
IPR002885 | Pentatricopeptide_repeat | 158 | 204 |
IPR002885 | Pentatricopeptide_repeat | 22 | 69 |
No external refs found! |