Description : (at1g11290 : 687.0) Pentatricopeptide Repeat Protein containing the DYW motif. Required for editing of multiple plastid transcripts. Endonuclease activity.; CHLORORESPIRATORY REDUCTION22 (CRR22); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G57430.1); Has 48258 Blast hits to 14436 proteins in 289 species: Archae - 1; Bacteria - 2; Metazoa - 166; Fungi - 164; Plants - 47192; Viruses - 0; Other Eukaryotes - 733 (source: NCBI BLink). & (q76c99|rf1_orysa : 121.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1374.0) & (original description: no original description)
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Picea release: MA_43615g0010 | |
Cluster | HCCA clusters: Cluster_227 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
81625 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.04 | Orthogroups_2024-Update | |
A4A49_25971 | No alias | pentatricopeptide repeat-containing protein | 0.03 | Orthogroups_2024-Update | |
At4g14820 | No alias | Pentatricopeptide repeat-containing protein At4g14820... | 0.03 | Orthogroups_2024-Update | |
Bradi1g47160 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
GRMZM2G168170 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.01G048100 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
Glyma.20G154600 | No alias | Pentatricopeptide repeat (PPR-like) superfamily protein | 0.04 | Orthogroups_2024-Update | |
HORVU6Hr1G067620.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
LOC_Os01g72930 | No alias | pentatricopeptide, putative, expressed | 0.03 | Orthogroups_2024-Update | |
MA_28051g0010 | No alias | (at1g11290 : 601.0) Pentatricopeptide Repeat Protein... | 0.04 | Orthogroups_2024-Update | |
PSME_00004170-RA | No alias | (at2g27610 : 399.0) Tetratricopeptide repeat (TPR)-like... | 0.04 | Orthogroups_2024-Update | |
PSME_00007652-RA | No alias | (at1g11290 : 614.0) Pentatricopeptide Repeat Protein... | 0.04 | Orthogroups_2024-Update | |
PSME_00013800-RA | No alias | (at2g03880 : 405.0) Pentatricopeptide repeat (PPR)... | 0.03 | Orthogroups_2024-Update | |
PSME_00016248-RA | No alias | (at3g12770 : 631.0) Encodes a pentatricopeptide repeat... | 0.03 | Orthogroups_2024-Update | |
PSME_00016653-RA | No alias | (at3g02010 : 685.0) Pentatricopeptide repeat (PPR)... | 0.03 | Orthogroups_2024-Update | |
PSME_00016832-RA | No alias | (at4g18750 : 587.0) Encodes a pentatricopeptide (PPR)... | 0.04 | Orthogroups_2024-Update | |
PSME_00030552-RA | No alias | (at4g18750 : 502.0) Encodes a pentatricopeptide (PPR)... | 0.04 | Orthogroups_2024-Update | |
PSME_00034005-RA | No alias | (at3g23330 : 585.0) Tetratricopeptide repeat (TPR)-like... | 0.04 | Orthogroups_2024-Update | |
PSME_00035769-RA | No alias | (at4g13650 : 702.0) Pentatricopeptide repeat (PPR)... | 0.03 | Orthogroups_2024-Update | |
PSME_00054022-RA | No alias | (at1g68930 : 531.0) pentatricopeptide (PPR)... | 0.06 | Orthogroups_2024-Update | |
PSME_00056296-RA | No alias | (at4g13650 : 664.0) Pentatricopeptide repeat (PPR)... | 0.03 | Orthogroups_2024-Update | |
PSME_00056460-RA | No alias | (at4g21300 : 575.0) Tetratricopeptide repeat (TPR)-like... | 0.03 | Orthogroups_2024-Update | |
PSME_00056843-RA | No alias | (at4g02750 : 457.0) Tetratricopeptide repeat (TPR)-like... | 0.04 | Orthogroups_2024-Update | |
Potri.001G075800 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Potri.003G191000 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
Potri.018G071800 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Sobic.007G201400.1 | No alias | RNA editing factor *(DOT4) | 0.03 | Orthogroups_2024-Update | |
Solyc03g114660 | No alias | Pentatricopeptide repeat-containing protein (AHRD V3.3... | 0.02 | Orthogroups_2024-Update | |
Sopen02g018640 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
Sopen08g024790 | No alias | PPR repeat | 0.02 | Orthogroups_2024-Update | |
evm.model.tig00000808.10 | No alias | no hits & (original description: no original description) | 0.01 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0008270 | zinc ion binding | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000155 | phosphorelay sensor kinase activity | IEP | Predicted GO |
MF | GO:0004673 | protein histidine kinase activity | IEP | Predicted GO |
MF | GO:0015399 | primary active transmembrane transporter activity | IEP | Predicted GO |
MF | GO:0015405 | P-P-bond-hydrolysis-driven transmembrane transporter activity | IEP | Predicted GO |
CC | GO:0016021 | integral component of membrane | IEP | Predicted GO |
MF | GO:0016775 | phosphotransferase activity, nitrogenous group as acceptor | IEP | Predicted GO |
MF | GO:0016887 | ATPase activity | IEP | Predicted GO |
MF | GO:0022804 | active transmembrane transporter activity | IEP | Predicted GO |
CC | GO:0031224 | intrinsic component of membrane | IEP | Predicted GO |
MF | GO:0042623 | ATPase activity, coupled | IEP | Predicted GO |
MF | GO:0042626 | ATPase activity, coupled to transmembrane movement of substances | IEP | Predicted GO |
MF | GO:0043492 | ATPase activity, coupled to movement of substances | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002885 | Pentatricopeptide_repeat | 265 | 290 |
IPR002885 | Pentatricopeptide_repeat | 93 | 121 |
IPR002885 | Pentatricopeptide_repeat | 568 | 591 |
IPR032867 | DYW_dom | 666 | 790 |
IPR002885 | Pentatricopeptide_repeat | 392 | 439 |
IPR002885 | Pentatricopeptide_repeat | 493 | 540 |
IPR002885 | Pentatricopeptide_repeat | 291 | 338 |
IPR002885 | Pentatricopeptide_repeat | 190 | 236 |
No external refs found! |