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  5. MA_43727g0010

MA_43727g0010


Description : (at3g02010 : 679.0) Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G27610.1); Has 47268 Blast hits to 13605 proteins in 263 species: Archae - 0; Bacteria - 2; Metazoa - 64; Fungi - 106; Plants - 46551; Viruses - 0; Other Eukaryotes - 545 (source: NCBI BLink). & (q76c99|rf1_orysa : 143.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1358.0) & (original description: no original description)


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_43727g0010
Cluster HCCA clusters: Cluster_97

Target Alias Description ECC score Gene Family Method Actions
106991 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 Orthogroups_2024-Update
109988 No alias mitochondrial editing factor 22 0.03 Orthogroups_2024-Update
30579 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Bradi1g47160 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Bradi5g13537 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
HORVU5Hr1G071640.4 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU5Hr1G113990.21 No alias RNA editing factor *(CRR28) 0.02 Orthogroups_2024-Update
PSME_00002375-RA No alias (at3g03580 : 696.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
PSME_00018763-RA No alias (at1g11290 : 389.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
PSME_00037497-RA No alias (at4g13650 : 692.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update
PSME_00054674-RA No alias (at4g33170 : 289.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004556 alpha-amylase activity IEP Predicted GO
CC GO:0005737 cytoplasm IEP Predicted GO
BP GO:0006801 superoxide metabolic process IEP Predicted GO
BP GO:0006887 exocytosis IEP Predicted GO
MF GO:0016160 amylase activity IEP Predicted GO
MF GO:0016597 amino acid binding IEP Predicted GO
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP Predicted GO
MF GO:0016746 transferase activity, transferring acyl groups IEP Predicted GO
MF GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups IEP Predicted GO
BP GO:0022406 membrane docking IEP Predicted GO
MF GO:0031406 carboxylic acid binding IEP Predicted GO
BP GO:0032940 secretion by cell IEP Predicted GO
MF GO:0043177 organic acid binding IEP Predicted GO
BP GO:0046903 secretion IEP Predicted GO
BP GO:0048278 vesicle docking IEP Predicted GO
BP GO:0051640 organelle localization IEP Predicted GO
BP GO:0072593 reactive oxygen species metabolic process IEP Predicted GO
BP GO:0140056 organelle localization by membrane tethering IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 400 447
IPR002885 Pentatricopeptide_repeat 500 546
IPR002885 Pentatricopeptide_repeat 71 117
IPR002885 Pentatricopeptide_repeat 301 328
IPR002885 Pentatricopeptide_repeat 641 669
IPR002885 Pentatricopeptide_repeat 42 70
IPR002885 Pentatricopeptide_repeat 14 39
IPR002885 Pentatricopeptide_repeat 146 169
IPR002885 Pentatricopeptide_repeat 574 596
IPR002885 Pentatricopeptide_repeat 247 272
IPR002885 Pentatricopeptide_repeat 174 198
IPR032867 DYW_dom 673 797
No external refs found!